Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01533 ATGAAATATAATGATGTTTTAATTTATCAAATACTGATTACTAATTCAATTGCTTCTTATCCCTCCTTGCCCTTTTTGTATGCATCTAGAGATTTTGGGCGGCAGCAGAGATATGCTCGTTTCTGTGGAAGAGTAGTTGTCCTTTCAATCCTTGCATTGCTTCTCTATCCATTTCTTTGGGCTTGGACTATAATTGGTACCCTGTGGTTCAGTCATTCCAAGAACTGCTTGCCTGAAGAAGGTCAGAAATGGGGTTTCCTCATCTGGTTACTTTTTAGCTACTGTGGACTCCTTTGCATTGCTTGCTTGTCACTGGGAAAGTGGTTGACACGAAGACAAGCACACTTATTGCGAGCCCAACAGGGTATCCCTGTATCTGAATACGGGGTTCTGGTTGATATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCAGGTCAAGAAACAAGAGGCATGGGCCAAGATACCGCTGCATATCATCCAGGACTTTACTTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTGAAGGCTGTTCCCACTGATTGCAGTGAATGCCCCATCTGCTTAGAAGAGTTCTATGTAGGGAATGAGGTCCGTGGCCTACCTTGTGCTCACAATTTTCACGTTGAATGCATTGATGAGTGGCTTAGGCTGAATGTGAAATGTCCTCGGTGCCGCTGCTCAGTGTTTCCAAATCTTGATCTTAGTGCTCTGTCCAATCTCCGTGCTGATTCAGAACGGTCTTCTGCCAGTGTTGTGACAACAACCAGATATGTGAGAGGCCAACCTTCTAGTCAAAGTTATCGGTTAAGATTACAGGGTCTTCTCCGCCCAGTGCGTGCTGAAATTGCAGGACCAGTTGGTGACACTGATAATGCTTTGGAAAATGCTGAGAACGGTCTTGTACCTGTTGTGACTCAAAATGCATCAACTGGAGACCAGGTCTCTTCTGTTGAATGCATGCTTGTCCGTCTTTCCACTGCACAAAGTTAG 1023 0.4497 MKYNDVLIYQILITNSIASYPSLPFLYASRDFGRQQRYARFCGRVVVLSILALLLYPFLWAWTIIGTLWFSHSKNCLPEEGQKWGFLIWLLFSYCGLLCIACLSLGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGMGQDTAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFYVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRADSERSSASVVTTTRYVRGQPSSQSYRLRLQGLLRPVRAEIAGPVGDTDNALENAENGLVPVVTQNASTGDQVSSVECMLVRLSTAQS. 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01533 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 241 IPR013083 -
Seca12g01533 340 ProSiteProfiles Zinc finger RING-type profile. 195 236 IPR001841 -
Seca12g01533 340 FunFam E3 ubiquitin-protein ligase SIS3 163 241 - -
Seca12g01533 340 SMART ring_2 195 235 IPR001841 -
Seca12g01533 340 Pfam Ring finger domain 194 236 IPR001841 -
Seca12g01533 340 SUPERFAMILY RING/U-box 177 244 - -
Seca12g01533 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 29 320 IPR044793 GO:0004842|GO:0010182
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01533 Seca-Chr12 16116483 16119502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01533 11 320 C3H Transcription Factor Family AT3G47990 70.927 1.11e-155 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01533 K16284 - gmx:100812016 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01533 12 16116483 16119502 Seca12g01533 12 16116483 16119502 ECH
Seca12g01533 12 16116483 16119502 Seca4g03088 4 52997730 53003198 PCT