Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01530 ATGAAAAACTCAAACACTACTAGTGATTCATCAAAACTCGATCGCAAAACTATCGAAAGGAACCGCAGAATTCACATGAAGTCTCTCTGCTTCAAGCTTATTTCTATTATCCCTTCTAAGTACCTCAAACCCTCCAAGGACATGCTTTCACAGCAGGACCAGCTGGATCTAGCAGCCACTTATATAAAGCATTTGAGAGAAAGAATAGAAAAACTGAAGGGGAAAAAGGAGCAAACCATGAGCATGATGAGCTCAAACCAAAACAACAACAATAATAGGATTTTCAATATTGGCTCAAAATTGCCAATACTTGAGATAAGAGACTTGGGTTCTGGTATTGAAGTCATGTTGATAAGTGGTTTGAACAAGAACTTCATGCTCTATGAAATAATTGGTGTCCTTGAGGAAGAAGGTGCTGAAGTTGTCACTGCAAACTTCTCTACCATTGCTGATAAGATCTTTTACACTGTTCATGCACAGGTTAAGATATCAAGAGTTGGTGTTGAGCCAACAAGGGTGTATCAGAGGCTTCAAGAGTTGATTGCACCACTAGAAAGCTGGGAGTACATCTCATGA 576 0.3941 MKNSNTTSDSSKLDRKTIERNRRIHMKSLCFKLISIIPSKYLKPSKDMLSQQDQLDLAATYIKHLRERIEKLKGKKEQTMSMMSSNQNNNNNRIFNIGSKLPILEIRDLGSGIEVMLISGLNKNFMLYEIIGVLEEEGAEVVTANFSTIADKIFYTVHAQVKISRVGVEPTRVYQRLQELIAPLESWEYIS. 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01530 191 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 4 180 - -
Seca12g01530 191 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 14 79 IPR036638 GO:0046983
Seca12g01530 191 Pfam Helix-loop-helix DNA-binding domain 15 66 IPR011598 GO:0046983
Seca12g01530 191 Gene3D - 1 94 IPR036638 GO:0046983
Seca12g01530 191 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 10 65 IPR011598 GO:0046983
Seca12g01530 191 FunFam Transcription factor bHLH162 3 94 - -
Seca12g01530 191 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01530 Seca-Chr12 16052723 16054844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01530 7 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 36.066 5.29e-29 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca12g01530 HLH 2.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01530 - - gmx:100811485 299.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01530 12 16052723 16054844 Seca4g03095 4 53090413 53091707 ECH
Seca12g01530 12 16052723 16054844 Seca12g01530 12 16052723 16054844 ECH
Seca12g01530 12 16052723 16054844 Seca4g03095 4 53090413 53091707 PCT