Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01529 GAAGAAGAAGATGAAGAACAACCAACACAACAAAATCAACTGAAACATCCACAACCCAGAAAAAATTCATTTTTTTCTCTGTTTTTCTTTATTTTTTTACACTCAAGCCTTCATCATCATCATCGTATTATATATATAGATAGAGAGAAGGACAGAGAAAGGTTGAGAAAGAAGATGAAGGAAAGCAGTGATGGGTTTGTGAGGGCAGATCAGATTGATCTGAAGAGCATAGATGAACAACTGGAGAGACACCTCAACAAGGTGTTGACCATAGAAAAGAAAAAGCGCACAGAAGAAGAAGATGCTGATCATCATCATGTTCATGTTCACACTGGTTCTCCCACTGCCATGAAGTTCAAAACTGCTGTTGGTGGGGTTAGCTTCAAGAAGCAAAAGCAAGAGTGGGAAATTGATCCTTCCAAACTAATCATCAAGAGTGTTATTGCTCGTGGCACTTTTGGCACTGTCCATCGTGGTATCTATGATGCCCAAGATGTTGCTGTTAAATTGCTGGACTGGGGTGAAGAAGGCCAAAGGACAGAAGCTGAAGTTGCTTCCCTGAGGGCAGCGTTTATACAGGAAGTTGCTGTTTGGCATAAACTTGATCATCCCAATGTCACAAAGTTTATAGGGGCGACAATGGGGTCTGCAGAATTGCAGATACAAACTGATAATGGCCTAATTAGCATGCCAAGCAATGTCTGTTGTGTTGTTGTGGAGTATCTTGCTGGAGGTACGCTGAAGTCATACCTAATAAAGAACAGGAGGAGAAAGTTAGCTTTTAAGGTTGTCATCCAGTTGGCACTTGATCTTGCAAGAGGGTTGAGCTATCTTCACTCTCAGAAGATTGTCCATAGAGATGTAAAGACAGAGAACATGCTGTTGGATAAGACACGCACAGTTAAAATTGCTGATTTTGGTGTTGCGCGTGTTGAGGCATCAAATCCTAATGATATGACTGGGGAGACTGGTACTCTTGGTTATATGGCTCCAGAGGTTTTAAATGGCAACCCCTATAACAGGAAATGTGATGTGTACAGTTTTGGTATCTGTTTATGGGAGACATATTGTTGTGACATGCCATATCCTGACCTAAGTTTCTCAGAAATCACTTCAGCCGTTGTTCGCCAGAATTTGAGACCAGAAATACCAAGATGTTGCCCAAGTTCTCTAGCAAATGTAATGAAGAAATGCTGGGATGCGAGTCCCGATAAGCGGCCAGAGATGGATGAGGTAGTTTCCATGCTGGAGGCCATTGACACATCCAAAGGTGGAGGGATGATCCCTTATGATCAGCAGCAGGGTTGTCTTTGCTTCCGCAAGCATAGAGGGCCTTGA 1338 0.426 EEEDEEQPTQQNQLKHPQPRKNSFFSLFFFIFLHSSLHHHHRIIYIDREKDRERLRKKMKESSDGFVRADQIDLKSIDEQLERHLNKVLTIEKKKRTEEEDADHHHVHVHTGSPTAMKFKTAVGGVSFKKQKQEWEIDPSKLIIKSVIARGTFGTVHRGIYDAQDVAVKLLDWGEEGQRTEAEVASLRAAFIQEVAVWHKLDHPNVTKFIGATMGSAELQIQTDNGLISMPSNVCCVVVEYLAGGTLKSYLIKNRRRKLAFKVVIQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWETYCCDMPYPDLSFSEITSAVVRQNLRPEIPRCCPSSLANVMKKCWDASPDKRPEMDEVVSMLEAIDTSKGGGMIPYDQQQGCLCFRKHRGP. 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01529 445 Pfam Protein tyrosine and serine/threonine kinase 144 416 IPR001245 GO:0004672|GO:0006468
Seca12g01529 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 283 295 IPR008271 GO:0004672|GO:0006468
Seca12g01529 445 Gene3D Transferase(Phosphotransferase) domain 1 243 434 - -
Seca12g01529 445 FunFam Kinase suppressor of Ras 1 131 226 - -
Seca12g01529 445 Coils Coil 74 94 - -
Seca12g01529 445 ProSiteProfiles Protein kinase domain profile. 142 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01529 445 SUPERFAMILY Protein kinase-like (PK-like) 127 416 IPR011009 -
Seca12g01529 445 Gene3D Phosphorylase Kinase; domain 1 130 225 - -
Seca12g01529 445 FunFam Serine/threonine-protein kinase HT1 242 427 - -
Seca12g01529 445 PRINTS Tyrosine kinase catalytic domain signature 387 409 IPR001245 GO:0004672|GO:0006468
Seca12g01529 445 PRINTS Tyrosine kinase catalytic domain signature 277 295 IPR001245 GO:0004672|GO:0006468
Seca12g01529 445 PRINTS Tyrosine kinase catalytic domain signature 239 252 IPR001245 GO:0004672|GO:0006468
Seca12g01529 445 PRINTS Tyrosine kinase catalytic domain signature 343 365 IPR001245 GO:0004672|GO:0006468
Seca12g01529 445 SMART serkin_6 142 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01529 445 CDD STKc_MAP3K-like 148 416 - -
Seca12g01529 445 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 87 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01529 Seca-Chr12 16022269 16027670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01529 59 377 MAP Kinase Kinase Kinase AT5G50000 79.751 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Seca12g01529 PK_Tyr_Ser-Thr 1.5e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01529 - - gmx:100807921 717.227