Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01527 ATGTCTCATATTTCCAACCAAAGGGACCGCCGTATCCTATCATTCCCGGCGGTTCACCCTTGCGAAGGCATATCTCCGGCGACACTCCTCGCTTCTCTAATCACTCTCTCAAAAAACATATGCATTTTCCAATCCGAATCATTCCTCACCCAACGGAAAAACGCCAGAGAAACAATACGCCAAATCAGCATCCTTTTACTATTCCTCCATGAAATTCAAGACCGTGGATTGGCTATCCCTAACTCCATTGTCCTCTGCTTCTCAGAGCTCCATTTCAGTTTACAAAAGATTCATTTCTTGTTACAAGATTGTGCTCGTGAAGGTGCTCGCTTATTGATGCTAACGAAATCTCAACACGTTGCGTCGCAGTTCCGTGCTCTCATTCGTGCGGTTGCCACAGCGCTTGACGTTTTGCCTCTGCATAGGGTGGATGTGTGTGAGGAAGTGAAGGAGTTAGTTGAGTTAGTTGCGAAGCAAGCGAGGAAAGCCAAGTTCGATGTGGACCCCAACGACGAGCGTGCGAGCAGACGAGTTCATTCCGTTTTGCGTCAATTCGAAAGAGGAACCGAACCGGACGTAACCGCATTGCAGGGAATCCTCAACTACCTTGAAATCAAGAACTGGAGCGATTGCAACAGGGAAATCGAATTCTTAGAAGAAGAAATCAGTTTGGAGTATCGTGATTGCAAAGAGCGAGAGGTTCCTCTTTTGAGTAGCTTGGTTGGATTCTTGACCTACTGCAGAGTAGTGATATTCGAAAAACTGAACTACGACTTTCCATTTCCCTCACGAAACTCTGATCAATCAGAAGCTAGGCACAGCACAGAGATGATAACTTGCGTGAATCCAGAGGATTTCCGGTGTCCGATTTCGCTTGAATTGATGACAGATCCGGTGACGGTTTCAACAGGCCAGACCTACGACAGAGCCTCAATTCAAAAATGGCTCAAAGCTGGAAACAAGATATGTCCTAAAACAGGGGAGAATCTAACAAACACAGAGTTAGTCCCTAACACGACGCTCAAGAGGCTAATCCAACAGTTCTGTTCTGACAACGGCATTTCCCTTGCGAAATCAACTAACCGTAGCCGTGACATAACGAGGACAATCGTGGCGGGAAGCTCAGCAGCAGCACATGCTATGCAGTTCCTTTCGTGGTTTCTCACTCGCCGGCTCGTGTTTGGAACTGAAGAACAGAAGAACAAAGCTGCTTATGAGATTCGCGTGCTTGCTAGGTCCAGCATTTTTAACAGAGCGTGCTTGATTGAAGTTGGCACTGTGCCGCCACTGTTAGATCTTTTAACCACTGATGATATTGATAGATCCACGCAAGAGAATGCGATCTCTGCTTTGTTGAAGCTTTCAAAGCACGCAAGTGGTCCTGAGAATATCATGGAAAGTGGAGGTTTAAACCCCATTCTCTATGTACTCAAAAACGGACTTAGCCTTGAAGCTCGCCAAATTGCAGCTGCTACGGTTTTTTACCTTTCTTCGGTGAAAGAGTACAGGAAATTAATAGGGGAAAACCCAGAGGCAATTCCAGCTTTGGTGGAGTTGGTAAAGGGAGGAACAACCTGTGGGAAAAAGAATGCTGTGGTTGCGATTTTCGGGCTTCTTTTGCTTCCTAGGAATCATCAAAGGGTGCTTGAGGCTGGTGCTGTTCCTGTTCTTGTTGATGTTTTGGCTACATGTGATAAGGATGAACTTGTCACTGAATGTTTAGCTGTTCTTGCAGCACTGGCTGAGAATGTGGATGGAGCACATGCTGTGTTACAACAAGGCTCTGCGTTGGCTTTGATCATTGGGATGTTGCGATCTGCCACGTCACGTGCAGGGAAAGAACACTCTGCTTCTATCTTGCTGTCACTCTGTGTCAATGTGGGTGCAGAGGTTGTGGCTGTTCTTGCTAAGGATTCTTCGCTGATGCCTATGCTTTATTCGCTTATTACTGATGGTACTCATCAAGCTGCAAAGAAAGCACGATTCCTCATCAAAGTTCTACAAGATTTCAATGAAACAAGAACTTCTGGATTGAAACGAGACAAGTGA 2049 0.4592 MSHISNQRDRRILSFPAVHPCEGISPATLLASLITLSKNICIFQSESFLTQRKNARETIRQISILLLFLHEIQDRGLAIPNSIVLCFSELHFSLQKIHFLLQDCAREGARLLMLTKSQHVASQFRALIRAVATALDVLPLHRVDVCEEVKELVELVAKQARKAKFDVDPNDERASRRVHSVLRQFERGTEPDVTALQGILNYLEIKNWSDCNREIEFLEEEISLEYRDCKEREVPLLSSLVGFLTYCRVVIFEKLNYDFPFPSRNSDQSEARHSTEMITCVNPEDFRCPISLELMTDPVTVSTGQTYDRASIQKWLKAGNKICPKTGENLTNTELVPNTTLKRLIQQFCSDNGISLAKSTNRSRDITRTIVAGSSAAAHAMQFLSWFLTRRLVFGTEEQKNKAAYEIRVLARSSIFNRACLIEVGTVPPLLDLLTTDDIDRSTQENAISALLKLSKHASGPENIMESGGLNPILYVLKNGLSLEARQIAAATVFYLSSVKEYRKLIGENPEAIPALVELVKGGTTCGKKNAVVAIFGLLLLPRNHQRVLEAGAVPVLVDVLATCDKDELVTECLAVLAALAENVDGAHAVLQQGSALALIIGMLRSATSRAGKEHSASILLSLCVNVGAEVVAVLAKDSSLMPMLYSLITDGTHQAAKKARFLIKVLQDFNETRTSGLKRDK. 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01527 682 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
Seca12g01527 682 FunFam RING-type E3 ubiquitin transferase 362 678 - -
Seca12g01527 682 Pfam Armadillo/beta-catenin-like repeat 417 455 IPR000225 GO:0005515
Seca12g01527 682 FunFam RING-type E3 ubiquitin transferase 281 356 - -
Seca12g01527 682 Pfam U-box domain 283 352 IPR003613 GO:0004842|GO:0016567
Seca12g01527 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 425 469 IPR000225 GO:0005515
Seca12g01527 682 SMART arm_5 541 582 IPR000225 GO:0005515
Seca12g01527 682 SMART arm_5 413 456 IPR000225 GO:0005515
Seca12g01527 682 SMART arm_5 457 498 IPR000225 GO:0005515
Seca12g01527 682 SUPERFAMILY ARM repeat 392 667 IPR016024 -
Seca12g01527 682 CDD RING-Ubox_PUB 283 335 IPR045210 -
Seca12g01527 682 Gene3D - 357 675 IPR011989 -
Seca12g01527 682 PANTHER U BOX DOMAIN-CONTAINING 58 667 - -
Seca12g01527 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 552 595 IPR000225 GO:0005515
Seca12g01527 682 SUPERFAMILY RING/U-box 274 355 - -
Seca12g01527 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 356 IPR013083 -
Seca12g01527 682 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01527 Seca-Chr12 16005267 16007315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01527 1 679 U-box Gene Family AT1G10560 41.270 1.53e-173 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01527 - - tpra:123884536 953.355