Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01526 ATGGCAGCTCGCACACTTTCCTGGTTGCTCTCTCGCTCTCGCTCTCTTTCCTCTTCTTCGTCTGGAACTCCTTCCCTGCTTCGCTTACTAGGAAAAAAATCTGGAGGGTGGAGAAACATTAACAGGTTTAGCACAGCTGCAGCAGTTGAGGAATTGGTCACACCACAAGTTTCAATAAATTATACACAGCATCTCATAAATGGCCACTTTGTGGATGCTGCATCAGGGAAAACATTTCCAACCTATGACCCACGAACAGGGGAAGTGATTGCTCATGTGGCTGAAGGTGATGTTGAAGATATTGACCGTGCAGTATCAGCAGCTCGCAAGGCCTTTGATGAAGGACCTTGGCCAAAAATGACTGCTTATGAAAGGTGTCGGATATTGCTGCGGTTTGCTGATTTGGTTGAGAAGCACAATGATGAGCTTGCAGCTCTGGAGACATGGAACAATGGAAAGCCTTATGAACAGGCTGCCAAAGCTGAAGTACCAATGTTTGCTCGTTTATTTCGATATTATGCTGGTTGGGCAGATAAAATTCATGGGCTGACTGTCCCAGCTGATGGAGATTATCATATTCAGACATTGCATGAACCAATTGGTGTAGCAGGACAAATTATACCTTGGAACTTTCCTCTACTTATGTTTGCTTGGAAAGTTGGACCAGCTTTAGCATGTGGTAATACCATCGTCCTTAAGACTGCTGAGCAAACACCTCTAACAGCTCTTGTTGTGGCAAAACTACTTCACGAGGCTGGTCTTCCCCCTGGTGTTCTGAATGTAGTTTCTGGGTATGGTCCAACTGCTGGTGCACCTCTTGCAAGTCATATGGATGTGGACAAGCTAGCATTCACTGGGTCAACAGATACCGGAAAAGTTGTACTTGAATTGGCTGCCAGAAGCAATCTTAAGCCAGTGACATTGGAGCTTGGAGGGAAATCACCTTTCATAGTATGTGAGGATGCTGATGTTGATCACGCTGTTGAACTTGCACACTTTGCTCTGTTCTTTAATCAGGGGCAATGCTGCTGTGCTGGGTCTCGTACCTTTGTGCATGAGCGTGTCTATGATGAGTTCATAGAGAAAGCAAGGAAACGGGCTTTGAGACGTGTTGTTGGTGATCCATTCAAGAAGGGCGTTGAACAAGGTCCTCAGATTGACACAGAGCAATTTGAGAAAGTCCTTAGGTACATAAGGTCTGGAATTGAAAGCAGTGCTACCCTTGAGTGTGGGGGTGATAGATTGGGCTCAAAAGGTTTCTTTGTCCAGCCAACTGTCTTCTCAAATGTTAAGGTATTGATAATTTGCTTTTCCCACGATGATATGCTGATAGCACAAGATGAAATCTTTGGTCCAGTTCAGTCCATCTTGAAATTCAAGGACATTGATGAAGTAATACGACGGGCAAATGCAACACGTTATGGTCTAGCTGCAGGTGTATTCACCAAGAGTGTGACCACAGCCAACACTTTGATGCGGGCACTGAGAGCTGGAACTGTGTGGGTTAATTGCTTTGATGTTTTTGATGCTGCAATTCCTTTTGGTGGGTACAAGATGAGTGGCATAGGCAGGGAGAAAGGAATCTACAGTCTTCACAACTACCTGCAGGTGAAAGCTGTTGTCTCACCATTGAAGAATCCTGCGTGGCTGTAG 1653 0.4525 MAARTLSWLLSRSRSLSSSSSGTPSLLRLLGKKSGGWRNINRFSTAAAVEELVTPQVSINYTQHLINGHFVDAASGKTFPTYDPRTGEVIAHVAEGDVEDIDRAVSAARKAFDEGPWPKMTAYERCRILLRFADLVEKHNDELAALETWNNGKPYEQAAKAEVPMFARLFRYYAGWADKIHGLTVPADGDYHIQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLTALVVAKLLHEAGLPPGVLNVVSGYGPTAGAPLASHMDVDKLAFTGSTDTGKVVLELAARSNLKPVTLELGGKSPFIVCEDADVDHAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFIEKARKRALRRVVGDPFKKGVEQGPQIDTEQFEKVLRYIRSGIESSATLECGGDRLGSKGFFVQPTVFSNVKVLIICFSHDDMLIAQDEIFGPVQSILKFKDIDEVIRRANATRYGLAAGVFTKSVTTANTLMRALRAGTVWVNCFDVFDAAIPFGGYKMSGIGREKGIYSLHNYLQVKAVVSPLKNPAWL. 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01526 550 FunFam Mitochondrial aldehyde dehydrogenase 2 314 511 - -
Seca12g01526 550 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 47 540 - -
Seca12g01526 550 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 312 509 IPR016163 GO:0016620
Seca12g01526 550 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 66 538 IPR016162 GO:0016491
Seca12g01526 550 FunFam Aldehyde dehydrogenase, putative 512 538 - -
Seca12g01526 550 Pfam Aldehyde dehydrogenase family 70 540 IPR015590 GO:0016491
Seca12g01526 550 CDD ALDH_F2BC 59 541 - -
Seca12g01526 550 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 336 347 IPR016160 GO:0016491
Seca12g01526 550 SUPERFAMILY ALDH-like 56 543 IPR016161 GO:0016491
Seca12g01526 550 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 66 323 - -
Seca12g01526 550 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 308 315 IPR029510 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01526 Seca-Chr12 15992261 15997565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01526 1 550 Aldehyde Dehydrogenase Gene Family AT3G48000 77.495 0.0 894
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01526 K00128 - gmx:100811501 937.947