Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01515 ATGGTGGCAAGATCATTCATTAATTTGTCAGACCTGGTGTCAGGGGATTCTTCAAATTTACCTCAAACTCCCAAAGCTCTTCCCCAAGATATAACTGTTCCAGGAGTTATGTTTGATTTAGATGGTGAACAAAGTGATGATAATGATTCAAATGCTGTCTCTTCAGAATACCATCACAAGATCATTGTAGTAGCAAATTTTCTTCCTCTCAATGCTCAAAAGGAGAAAATATCTGGCAGATGGTGCTTTACTTATGATGATGATTCAATTTTGTTGCAATTAAAGGATGGTCTCCCTCCTGACACCAGCATTGTTTATGTGGGATCTTTGAAGGTTGATGTTGATGCTAGTGAACAAGAGAGTGTTTCTCTTAAGTTGCTGGAGGAATTCAATTGCTTGCCAACCTTTATTCCTTCAGACCTCCAGAAACAATTTTATAATGGATTCTGTAAGCAGCATTTGTGGCCTCTATTCCATTACATGTTGCCTATGTCTCCAGACTACTGCAATCGCTTTGATAGGTCACTGTGGCAAGCTTATATTTCTGCTAATAAGATATTTGCAGATAAAGTCATGGAGGTCATTAATCCAGAACATGATTATGTATGGGTTCATGATTATCATCTTATGATTCTTGCAACATTTCTGAGGAGGCGATACAGTCAGATCAAACTAGGATTTTTCCACCACAGCCCATTTCCATCTTCGGAAATTTATCGGGCTCTGCCTGTCAGAGATGAAATTTTGAAAGCACTGCTTAATGCTGACTTAATTGGTTTTCATACATTTGATTATGCTCGGCATTTTCTATCTTGCTGCAGTCGGCTTCTTGGTGTAAAATATGAAACCAATAAGGGTTACATTAAGCTTGAATACTTTGGGCGTACAATCTTCATTAAAATTTTGCCTGTAGGGATTCATATGGGCCAACTACAATCTGCCTTAAATCACCCTTCTGCTTTAGTCAATGTCAGAGAAATGTGCAAGAAGTATGAGGGGAAAAAACTTATTCTCGGTGTTGATGACATGGACATATTTAAAGGTATCAACCTAAAGCTCTTGGCCATGGAACAACTCCTTCAGCAACATCCAGAATTTCAGGGTGAATTAATACTGGTCCAAATTGTAAATCCACCAAGGAATAACGGTAATGATGTCAAAGAAGAGAGGAAGGAGGCATACAATACTTCAAAAAGGATAAATGAAAGGTTTGGTTTTGAAGGTTATGAGCCTGTCATCATTATTGATCGTCCTCTTCCTTTATATGAGAAGACATCCTACTTTGCTTTAGCAGAATGTTGTGTTGTGAGTGCATTGCGGGATGGTATGAATTTGACTCCCTACAAGTACATTGTCTGCAGGCAGGGGAGTCCTATAATGGATGAAGCTCTAGAAATTTCTTCTGAGTCCCCTCGTACAAGTGTACTTGTTGTTTCTGAGTTTATAGGTTGCTCACCATCTCTTAGTGGGGCAATCAGGGTAAACCCATGGGATATTAATGCTGTAGCTGATGCATTGAATTTGGCCATCACAATGCCCATTAGAGAGAAACAGTTACGGCATGAGAAGAACTTTCAATATGTTAGCTCTCATGATGTAGCTTACTGGGCCCGAAATTTTATGCAAGATCTACAGTACTCGTGCAAGGATCACTACAGCAAAAATTGCTGGGGGATTGGTTTTGGCCTGAATTTCAGAATTTTGGCCCTTTCTCCTACTTTCAAGAAGCTTTCCGTACGCCACATTGTCCCTGAATATAAAAAGACAAATTGCAGGGTACTCTTTTTGGACTATGATGGAACAGTTGCAACTCAAGCTTCCAATGCTATAACCCCCAGTCCTGAAGTCATAAATGTTCTAAAAAACCTTTGCAGTGACCCTAACAACACTGTGTTTATAGTAAGTGGCAGGGGGAAAGACACACTGAGTGCATGGTTTGATCAGTGTGAGAATCTTGGTATAGCAGCTGAGCATGGTTATTTTCTAAGATGGGGTCAACAGTCAACTTGGGAAATGAATCATATAAGTGCAAATTTTTCTTGGAAAAGCATAGCAGAGCCCTTGTTGAGATTGTATACTGAGGCAACAGATGGCTCCTATATAGAGACCAAAGAGAGTGCCTTGGTATGGCACTACTACAATGTCGATCCTGATTTTGGATCTTGGCAAGCCAAGCAGCTATTGGATCACCTTGAAAGTTTATTGGCAAATGAACCTGTAGTTGCTAAGAAGGGAAAGCATATCATTGAAATCCAGCCACAGGGCATTAACAAAGGGTTAGTTGTAGAGGAAGTTCTGTCTACAATGACAAGGAATGGGAAATTGCCAGATTTTGTGCTGAGCATAGGGGATGATAGGTCTGATGAGGACATGTTTGAGGGCTTATTGACTAAAGCTTATGGTGGAGCCTCTTCTCCTGCACCTGAAATCTTTTCATGCACTGTTGGTCAAAAACCAAGTAAAGCTAAGTATTACTTAGATGATACTGTGGATGTGAGGAGCTTACTTGAAGCTCTTGCTACCGCTTCAGTGCCTGAATAA 2541 0.401 MVARSFINLSDLVSGDSSNLPQTPKALPQDITVPGVMFDLDGEQSDDNDSNAVSSEYHHKIIVVANFLPLNAQKEKISGRWCFTYDDDSILLQLKDGLPPDTSIVYVGSLKVDVDASEQESVSLKLLEEFNCLPTFIPSDLQKQFYNGFCKQHLWPLFHYMLPMSPDYCNRFDRSLWQAYISANKIFADKVMEVINPEHDYVWVHDYHLMILATFLRRRYSQIKLGFFHHSPFPSSEIYRALPVRDEILKALLNADLIGFHTFDYARHFLSCCSRLLGVKYETNKGYIKLEYFGRTIFIKILPVGIHMGQLQSALNHPSALVNVREMCKKYEGKKLILGVDDMDIFKGINLKLLAMEQLLQQHPEFQGELILVQIVNPPRNNGNDVKEERKEAYNTSKRINERFGFEGYEPVIIIDRPLPLYEKTSYFALAECCVVSALRDGMNLTPYKYIVCRQGSPIMDEALEISSESPRTSVLVVSEFIGCSPSLSGAIRVNPWDINAVADALNLAITMPIREKQLRHEKNFQYVSSHDVAYWARNFMQDLQYSCKDHYSKNCWGIGFGLNFRILALSPTFKKLSVRHIVPEYKKTNCRVLFLDYDGTVATQASNAITPSPEVINVLKNLCSDPNNTVFIVSGRGKDTLSAWFDQCENLGIAAEHGYFLRWGQQSTWEMNHISANFSWKSIAEPLLRLYTEATDGSYIETKESALVWHYYNVDPDFGSWQAKQLLDHLESLLANEPVVAKKGKHIIEIQPQGINKGLVVEEVLSTMTRNGKLPDFVLSIGDDRSDEDMFEGLLTKAYGGASSPAPEIFSCTVGQKPSKAKYYLDDTVDVRSLLEALATASVPE. 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01515 846 CDD GT20_TPS 60 545 IPR001830 GO:0003824|GO:0005992
Seca12g01515 846 Gene3D Glycogen Phosphorylase B; 52 313 - -
Seca12g01515 846 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 721 846 - -
Seca12g01515 846 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 548 - -
Seca12g01515 846 Gene3D Glycogen Phosphorylase B; 314 529 - -
Seca12g01515 846 CDD HAD_TPP 593 833 - -
Seca12g01515 846 SUPERFAMILY HAD-like 592 840 IPR036412 -
Seca12g01515 846 Pfam Trehalose-phosphatase 595 828 IPR003337 GO:0003824|GO:0005992
Seca12g01515 846 FunFam Trehalose-6-phosphate synthase 2 675 754 - -
Seca12g01515 846 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 48 841 IPR001830 GO:0003824|GO:0005992
Seca12g01515 846 NCBIfam trehalose-phosphatase 592 840 IPR003337 GO:0003824|GO:0005992
Seca12g01515 846 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 312 - -
Seca12g01515 846 Pfam Glycosyltransferase family 20 60 545 IPR001830 GO:0003824|GO:0005992
Seca12g01515 846 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 591 708 - -
Seca12g01515 846 NCBIfam HAD-IIB family hydrolase 594 793 IPR006379 -
Seca12g01515 846 Gene3D - 591 704 IPR023214 -
Seca12g01515 846 Gene3D - 722 845 IPR023214 -
Seca12g01515 846 FunFam Alpha,alpha-trehalose-phosphate synthase 314 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01515 Seca-Chr12 15414701 15418021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01515 1 843 Trehalose Biosynthesis Gene Families AT1G23870 63.108 0.0 1175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01515 K16055 - gmx:100808800 1367.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01515 12 15414701 15418021 Seca4g03110 4 53378199 53383413 PCT