Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01511 ATGAGCAGAATTCAACTTGAAGGCCAACAAAAGGTTGGTATTGACAATTTGAAGTACTCATCTTCTCCATCTCCTTTCTCTTCATTCCAAACTCCAAATGATGGTGATATTAGCAATGACAAAGAAGCAACATCATCATCATCTTCATCTCTTAGCAGAATCAGTCCACTTATTTTGCTAGTTATAATAGTTCTAGCAGTTATCTTCTTCATCTATGGACTTGTCCATTTGGTTCTATGGTTTCTGATGAAAAGGCCATCTTCTTCATCTCTTTATAATTCCAATAGATTCCAAGAAGCCACAAGAACCCGTGCTCTTCAAAGGCAGCTTCAACAGCTCTTTCACTTGCATGATTCAGGTCTAGACCAAGCTCTCATAGATGCTCTTCCTGTTTTCTACTACCAAGATTTGATGGGTTTGAAGGAACCTTTTGATTGTGCTGTGTGTCTCTGTGAGTTTTCAGACCAAGACAAGCTGAGATTGCTTCCTATGTGCAGCCATGCCTTTCACATGATTTGCCTTGACACATGGCTTCTCTCAAATTCTACATGTCCTCTTTGTAGAGCAACTCTTTCCAGCTCTAGTTTCCCTGTGGAAAATCCAATATTTAGTGTTGAAAACTCTTTGGTTCTTTCAAACAGATTAGTCACAAGTGAAGAAGAGAATAATGGGTGTTCAGATAGTCAAAGACAAGTAAGTGCAGAGGAACAAATAGGTGGGAAAAGGGTGTTTTCTGTGAGACTTGGAAAATTCAGAAATTATGGAATGGAGGGTGGAGAGGTAAGAGGAGGAATAGTAGAGGATAGTAGCTGTAGCTTGGATGCTAGAAGATGCTATTCCATGGGTTCATATCAGTATGTGGTTCGTGATTCAAATCTGCAAGTGGTGTTATCTCAATGTTGTGATGACAGAAGAGGTGAAGAAAATGGGAATGTGGAGGGAAAGAGGATAGGCAACACAACCAAAGTTGAGAGCTTCTCTGTTTCCAAGATCTGGCTTTGGTCCAAGAAGAGCAAATTTCATAGTTGTAATGATGATTTCCCTTGA 1047 0.3983 MSRIQLEGQQKVGIDNLKYSSSPSPFSSFQTPNDGDISNDKEATSSSSSSLSRISPLILLVIIVLAVIFFIYGLVHLVLWFLMKRPSSSSLYNSNRFQEATRTRALQRQLQQLFHLHDSGLDQALIDALPVFYYQDLMGLKEPFDCAVCLCEFSDQDKLRLLPMCSHAFHMICLDTWLLSNSTCPLCRATLSSSSFPVENPIFSVENSLVLSNRLVTSEEENNGCSDSQRQVSAEEQIGGKRVFSVRLGKFRNYGMEGGEVRGGIVEDSSCSLDARRCYSMGSYQYVVRDSNLQVVLSQCCDDRRGEENGNVEGKRIGNTTKVESFSVSKIWLWSKKSKFHSCNDDFP. 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01511 348 Pfam Ring finger domain 145 188 IPR001841 -
Seca12g01511 348 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Seca12g01511 348 MobiDBLite consensus disorder prediction 14 48 - -
Seca12g01511 348 CDD RING-H2_EL5-like 145 188 - -
Seca12g01511 348 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 48 332 - -
Seca12g01511 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 195 IPR013083 -
Seca12g01511 348 SMART ring_2 146 187 IPR001841 -
Seca12g01511 348 SUPERFAMILY RING/U-box 125 194 - -
Seca12g01511 348 FunFam RING-H2 finger protein ATL46 108 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01511 Seca-Chr12 15378742 15379788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01511 52 339 C3H Transcription Factor Family AT2G18650 42.647 2.69e-57 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01511 - - ccaj:109807149 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01511 12 15378742 15379788 Seca12g01511 12 15378742 15379788 ECH