Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01510 ATGGGTGTAAATCCCATCTGGGTACTCTTCATTGTCATGTTTTTGTTCTTTCCAATTACCTATTCAGAGGATGAAGTGGTGAAGAAGGCCCTAGTAAGATTCATGGACAAACTTGCACTAGGGAATCCACAAAGGCATGCCAAGTATTGGGGTTGGAACCTTGCTTCAGACCCTTGCACTGGTAATTGGTATGGTGTGAGTTGCTTAAGGGGGAAAGTGAATAGTATAGTTCTTGATGATTCCAGCTTAAATGGGACTTTAGATGCCACTTCTCTTTGCATGGCAAACACTCTTCAAAGCCTTAGCTTGAAGAAAAACAATTTACATGGATTGGTACCTGAGGATATAGGACTTTGTAAGTCCTTGACTCATTTGTATTTAAGTGACAACAACTTCTCTGGTGATCTTCCAGCTTCTCTTGCAGAATTAGGCAATTTGAAGAGGCTTCATGTTGCAAACAACAACTTCTCTGGAGAGCTTCCTAATATGATTCATGTTTCAGGGTTGATATCTTTTCTTGCTGAAAACAACAAATTCAATGGGGAAATTCCTGATTTTAACTTCTCCATGCTTTTGGAGTTTAATGTCTCCAACAACAATTTAGAGGGTCCAATTCCTGATGTTAGAGGGGCATTCTATGTAGATAGCTTTTCTGGCAATCCCAATTTGTGTGGAACACCACTTCCAAAGGCATGTCCCCCTACTCCTCCACCACATGAAGGGAAAGACAGAAAATCCTTCATTGATAGTTTGGGTACTTATTCAGGTTATGTAATTCTAGGTGTATTTGTCCTGTTTTTGTTTGCCTACATATTGGTAAGGAAATTCAAGACCAAAGAAGAAGCATTGGCCATTGAAAAGAAGGGAGTGGCAGAAGATACCAGTGATGAAAAGCCTAGAGAATTTTCCTCTGGAACTAGGAGTGGCAATGGGATGAGATCCGGGAATTCAATTGCATTGGCATCCTTTGAAAGTGGGATGAACACATCAACATCAAATCTTGTTGTTTTCTCAAGCCCAGTGTCAAAGGCATTGAAACTTGAGGATTTGCTCAAAGCTCCTGCTGAATTAATTGGGAGAGGAAAGCATGGAAGCCTCTACAAGGTGATGCTTGACAATGGGGGGCTTTTGGAAGTCAAGTGGATAAAGGATTGGAGAATTTCAAAACAAGATTTTGAGAGAAGGATGGACAAGATTGGCCAAGTGAAGCATCCATATGTAGTGCCACTTGTTGCATATTATTGCTCACCACAAGAGAAGCTACTAGTATATGAATACATGGAGAATGGGAGTCTCTTCCAAATGCTATGTGGATCCCAAAGTGGCCAATCTTTTGACTGGTGGAGCAGACTTAATGTTGCTGCTAACATAGCTGAGGCTTTGGCTTATATGCATGAGAAGCTTCATGGAAGTGGAATAGCTCATGGTAACTTAAAATCAAGTAACATTTTATTCGGCAAGGATATGTATCCAAGCATAAGCGAATATGGTCTGATGGTGATTGATGATCAAGCTCAAAGTGAAATTTCTCATGGTAGAAGTCTCAAAAACAAGAGTCTGATTGCTGCTAATGCATATAGCACCTTCAAAGTTGATATATATGCCTTTGGTGTGATACTTCTTGAGTTGCTGACAGGAAAAGTAGTTCAAAATAATGGATTCAATCTGGCCAAATGGGTGGAATCAGTGGTCAGAGAGGAATGGACTATTGAAGTTTTTGACAAGTCATTAATGTCACAAGGTGCTAGTGAAGAGAGGATGATGAACTTGTTGCATGTAGCACTAAAATGCACAAATCCTTCTCCAAGTGATAGACCAAGCATGAGTGAAGTTGCAGCAATCATAAGTACATTGAAAGAGGAAGAAGAAAGATACACAAGCTTCGACCAATAA 1893 0.4015 MGVNPIWVLFIVMFLFFPITYSEDEVVKKALVRFMDKLALGNPQRHAKYWGWNLASDPCTGNWYGVSCLRGKVNSIVLDDSSLNGTLDATSLCMANTLQSLSLKKNNLHGLVPEDIGLCKSLTHLYLSDNNFSGDLPASLAELGNLKRLHVANNNFSGELPNMIHVSGLISFLAENNKFNGEIPDFNFSMLLEFNVSNNNLEGPIPDVRGAFYVDSFSGNPNLCGTPLPKACPPTPPPHEGKDRKSFIDSLGTYSGYVILGVFVLFLFAYILVRKFKTKEEALAIEKKGVAEDTSDEKPREFSSGTRSGNGMRSGNSIALASFESGMNTSTSNLVVFSSPVSKALKLEDLLKAPAELIGRGKHGSLYKVMLDNGGLLEVKWIKDWRISKQDFERRMDKIGQVKHPYVVPLVAYYCSPQEKLLVYEYMENGSLFQMLCGSQSGQSFDWWSRLNVAANIAEALAYMHEKLHGSGIAHGNLKSSNILFGKDMYPSISEYGLMVIDDQAQSEISHGRSLKNKSLIAANAYSTFKVDIYAFGVILLELLTGKVVQNNGFNLAKWVESVVREEWTIEVFDKSLMSQGASEERMMNLLHVALKCTNPSPSDRPSMSEVAAIISTLKEEEERYTSFDQ. 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01510 630 Gene3D Phosphorylase Kinase; domain 1 319 426 - -
Seca12g01510 630 Pfam Protein kinase domain 356 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01510 630 MobiDBLite consensus disorder prediction 294 313 - -
Seca12g01510 630 SUPERFAMILY Protein kinase-like (PK-like) 356 613 IPR011009 -
Seca12g01510 630 PANTHER OS05G0588300 PROTEIN 9 620 - -
Seca12g01510 630 SUPERFAMILY L domain-like 55 228 - -
Seca12g01510 630 Gene3D Ribonuclease Inhibitor 170 235 IPR032675 -
Seca12g01510 630 Gene3D Transferase(Phosphotransferase) domain 1 427 629 - -
Seca12g01510 630 FunFam Leucine-rich repeat receptor protein kinase EMS1 89 186 - -
Seca12g01510 630 ProSiteProfiles Protein kinase domain profile. 352 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01510 630 Gene3D Ribonuclease Inhibitor 25 169 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01510 Seca-Chr12 15371299 15374137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01510 47 630 Receptor kinase-like Gene Family AT1G48480 34.944 9.52e-101 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca12g01510 Pkinase 1.1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01510 - - pvu:PHAVU_009G180700g 752.281