Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01487 ATGGATATCCAGATCCCCAGTCGACACTTATTCATTAACGGAGACTGGAAATCTCCCGTCCTCAACAAACGGATTCCCATCATCAACCCTTCCACTCAACAGATCATCGGGGAAATCCCAGCCGCTACTAAGGAAGATGTGGACCTCGCCGTAACCGCTGCCAGAAATGCTCTCTCCCGTAACAAGGGCGCAGATTGGGCTTCCGCTTCTGGCTCTGTTCGTGCCCGCTATCTACGCGCCATCGCCGCCAAGGTCCTTTCTATTTTCATCCATCCACTCATTCACCTTTATTCCACCACCTTACTCTTATTCCTCTCACAGATCACTGAGAAAAAGTCTCTGCTGGCAAAACTTGAAGCTATTGATTGTGGAAAACCACTTGATGAAGCCGCATGGGACATCGATGATGTTGCTGGTTGCTTTGAGTTCTATGCTGAGCTTGCTGAAAAATTGGATGAAAAGCAAAAAGCGCCGGTTTCTCTTCCTATGAAGACATTCAGGAGTTATGTCCTTAAGGAGCCTATTGGAGTTGTTGGATTAATAACTCCATGGAATTATCCTTTGTTGATGGCTACTTGGAAGGTTGCTTCTGCTCTGGCTGCTGGTTGTGCTGCAATATTGAAGCCGTCTGAGTTGGCATCTGTGACCTGTTTGGAATTGGGTGAAATATGCAAAGAAGTGGGCCTTCCTCCTGGTGTATTGAACATTCTCTCTGGATTAGGCCCTGAGGCTGGTGCTCCTTTGGCATCCCATCCTGATGTTGACAAGATTGCCTTTACTGGAAGCTCTGCAACTGGGAGCAAAATCATGACAGCTGCAGCTCAGCTGGTCAAGCCTGTTTCGCTAGAGCTTGGTGGAAAAAGCCCAATCATTGTTTTTGAGGATGTTGACCTTGATAAGGCTGCTGAATGGACCATCTTTGGCTGCTTCTGGACAAATGGTCAGATATGCAGTGCAACTTCCCGCCTTATTGTCCATGAAAGTATAGCTACAGAATTTTTGGATAGGATTGTAAAATGGATTAAAAACATCAAAATTTCAGATCCCTTGGAAGAAGGTTGCAGGCTAGGACCTGTTGTTAGTGAAGGACAGTATGAAAAAATATTGAAGTTTATCTCGAATGCTAAGAATGAGGGTGCGACCATTTTGACTGGTGGGTCTCGCCCAGAGCATCTAAAGAAAGGATACTTTATTGAACCAACTGTCATAACTGATGTGACTACTTCCATGCAAATTTGGAAAGAAGAAGTATTTGGACCTGTTCTCTGCGTAAAAACATTTAGTACTGAGGAAGAAGCTATTGATCTAGCAAATGACACTGTATATGGCTTAGGTTCTGCTGTAATATCAAATGATCTAGAAAGATGTGAGCGCATTACTAAGGCTTTTAAGGCTGGGATTGTATGGATCAATTGCTCTCAACCATGCTTCACCCAAGCCCCATGGGGAGGCGTTAAACGCAGTGGTTTTGGCCGTGAATTAGGCGAATGGGGACTTGATAATTACCTGAGTGTGAAGCAAGTGACACAGTATATCTCTGATGAACCGTGGGGATGGTACAAATCTCCTTCAAAGCTGTGA 1581 0.4491 MDIQIPSRHLFINGDWKSPVLNKRIPIINPSTQQIIGEIPAATKEDVDLAVTAARNALSRNKGADWASASGSVRARYLRAIAAKVLSIFIHPLIHLYSTTLLLFLSQITEKKSLLAKLEAIDCGKPLDEAAWDIDDVAGCFEFYAELAEKLDEKQKAPVSLPMKTFRSYVLKEPIGVVGLITPWNYPLLMATWKVASALAAGCAAILKPSELASVTCLELGEICKEVGLPPGVLNILSGLGPEAGAPLASHPDVDKIAFTGSSATGSKIMTAAAQLVKPVSLELGGKSPIIVFEDVDLDKAAEWTIFGCFWTNGQICSATSRLIVHESIATEFLDRIVKWIKNIKISDPLEEGCRLGPVVSEGQYEKILKFISNAKNEGATILTGGSRPEHLKKGYFIEPTVITDVTTSMQIWKEEVFGPVLCVKTFSTEEEAIDLANDTVYGLGSAVISNDLERCERITKAFKAGIVWINCSQPCFTQAPWGGVKRSGFGRELGEWGLDNYLSVKQVTQYISDEPWGWYKSPSKL. 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01487 526 PANTHER ALDEHYDE DEHYDROGENASE 4 85 - -
Seca12g01487 526 CDD ALDH_F10_BADH 27 510 - -
Seca12g01487 526 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 103 506 IPR016162 GO:0016491
Seca12g01487 526 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 290 481 IPR016163 GO:0016620
Seca12g01487 526 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 282 289 IPR029510 GO:0016491
Seca12g01487 526 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 2 88 IPR016162 GO:0016491
Seca12g01487 526 SUPERFAMILY ALDH-like 5 512 IPR016161 GO:0016491
Seca12g01487 526 Pfam Aldehyde dehydrogenase family 102 508 IPR015590 GO:0016491
Seca12g01487 526 Pfam Aldehyde dehydrogenase family 23 84 IPR015590 GO:0016491
Seca12g01487 526 FunFam Betaine aldehyde dehydrogenase 286 477 - -
Seca12g01487 526 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 310 321 IPR016160 GO:0016491
Seca12g01487 526 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 96 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01487 Seca-Chr12 15076817 15081078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01487 1 524 Aldehyde Dehydrogenase Gene Family AT1G74920 77.099 0.0 849
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01487 K00130 - gmx:100170731 934.48