Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01485 ATGTCCTCCTCTGCAGTGCCAGCGCCAGATCCTCTCTCTTCCAGACACTACACCTACAACCGCAAACAAAAATCCCTCGGTCTCCTCTGCACCAATTTCTTGAGCTTGTACAATCGAGACACCGTCCACTTGATTGGCCTCGACGACGCCGCTTCCCGATTAGGGGTAGAGAGAAGACGGATATATGATATAGTCAACGTTTTGGAGAGCATTGGGGTGCTTGCAAGAAAGGCCAAGAATCAATATACCTGGAAAGGTTTTGGGGCAATTCCCCTGGCTTTAAAAGAGCTCAAGGAAGAAGGTTCAAGGGAGAACCACAATGCCTTTGATGAGGGTGGCAACGATAATGCAAAGGTGTCTGATGATGAGGATGATGAAGAAACTTTATTGAATCCCAACACTGGAAGTCAGAATGACAAGTCGAATTCTAATTCTGTTATCTCCAGATCTGTGAAAAATGATAATCGAAGGGAAAAATCTCTGGCCCTGCTTACTCAAAATTTCGTCAAGCTCTTTGTCTGTTCTAACATAGAAATGATCTCCCTTGATGATGCAGCCAAATTGTTACTTGGGGATGCCCATAATTCATCAATAATGAGAATCCCATTTTGCCTTTCAGCAAAAGTTAGACGCCTATATGATATTGCAAATGTGCTATCCTCCATGAACCTTATTGAGAAGACCCATACGGCCCATACAAGAAAACCAGCATTTAGGTGGCTGGGTTTGAAAGAGAAGACATGGAATGAGTCACATCACAATTCAAATCTCAATGAGTCTAGGAAAAGGTCGTTTGGAAATGATGTCACCAACATCTGCTTTACGAGGAATAATACGGATTCATTCATGAATGGAGACCTCAGTCAAAACCTCAAGAAACAAAAAAAATTGGAAAATGGAAGTGGCCTAGGTCAGGAAGATAAAAGCAACTTAACACAAGGTACAAAACAGACTTCAAGGAGCTACCAATTTGGTCCTTTCGCTCCAGCTTACGTGTCCACAGTTGGAACCTCTGATAATAATAATGTGAAGCAGGTGCATGACTGGGAGAGTCTCGCTTCTGCACATTGCCCTCAGTATCAAAACCAAGCTTTGCGAGAACTATACTCCCATTATATGGAAGCATGGAAATCGTGGTACTCTGAAGTTGCTGGGAAGAGGACAATACAAATTTTGTAA 1179 0.4275 MSSSAVPAPDPLSSRHYTYNRKQKSLGLLCTNFLSLYNRDTVHLIGLDDAASRLGVERRRIYDIVNVLESIGVLARKAKNQYTWKGFGAIPLALKELKEEGSRENHNAFDEGGNDNAKVSDDEDDEETLLNPNTGSQNDKSNSNSVISRSVKNDNRREKSLALLTQNFVKLFVCSNIEMISLDDAAKLLLGDAHNSSIMRIPFCLSAKVRRLYDIANVLSSMNLIEKTHTAHTRKPAFRWLGLKEKTWNESHHNSNLNESRKRSFGNDVTNICFTRNNTDSFMNGDLSQNLKKQKKLENGSGLGQEDKSNLTQGTKQTSRSYQFGPFAPAYVSTVGTSDNNNVKQVHDWESLASAHCPQYQNQALRELYSHYMEAWKSWYSEVAGKRTIQIL. 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01485 392 MobiDBLite consensus disorder prediction 130 150 - -
Seca12g01485 392 PANTHER TRANSCRIPTION FACTOR E2F 13 360 IPR015633 GO:0000978|GO:0006357
Seca12g01485 392 FunFam E2F transcription factor-like E2FE 151 244 - -
Seca12g01485 392 SUPERFAMILY "Winged helix" DNA-binding domain 20 84 IPR036390 -
Seca12g01485 392 SMART E2F_TDP_2 21 86 IPR003316 GO:0005667|GO:0006355
Seca12g01485 392 SMART E2F_TDP_2 156 242 IPR003316 GO:0005667|GO:0006355
Seca12g01485 392 SUPERFAMILY "Winged helix" DNA-binding domain 158 243 IPR036390 -
Seca12g01485 392 Pfam E2F/DP family winged-helix DNA-binding domain 22 86 IPR003316 GO:0005667|GO:0006355
Seca12g01485 392 Pfam E2F/DP family winged-helix DNA-binding domain 158 242 IPR003316 GO:0005667|GO:0006355
Seca12g01485 392 MobiDBLite consensus disorder prediction 103 152 - -
Seca12g01485 392 MobiDBLite consensus disorder prediction 303 321 - -
Seca12g01485 392 Gene3D - 151 244 IPR036388 -
Seca12g01485 392 Gene3D - 16 89 IPR036388 -
Seca12g01485 392 FunFam E2F transcription factor 8 16 88 - -
Seca12g01485 392 MobiDBLite consensus disorder prediction 297 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01485 Seca-Chr12 15059056 15065143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01485 16 383 E2F-DP Transcription Factor Family AT3G48160 57.333 9.67e-128 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Seca12g01485 E2F_TDP 1.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01485 K09391 - gmx:100806151 558.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01485 12 15059056 15065143 Seca12g01485 12 15059056 15065143 ECH
Seca12g01485 12 15059056 15065143 Seca4g03151 4 53999613 54009761 PCT