Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01483 ATGACGGATTATTCTATGCCGGGGATGACAGGATATGAACTGCTCAAGAAAATCAAGCAGGAGTCTTCTGTTTTTAGAGAGATTCCGGTGGTGATCATGTCGTCGGAGAATATCTTGACTCGAATTGATAGGTGTCTGGAGGAAGGAGCAGAGGATTTTTTGTTGAAGCCGGTCAAGTTGTCAGATGTAAGACGCTTAAAAGATTTCATCATGAGAGGTGAAGTGAAGGAAGGGGAGAGAACATCTAACAAAAGAAGGAGATCAGATGATTGCAGCCAATCTCTATCTACTACATTCTCACCAATGTCTCATCCATGTGATACATGTTCATCAGTACTCTCAGTCTCACCACTATCGCCATCCACTTTATCCTCAAAAAAGTCTAGATTGTGA 393 0.4198 MTDYSMPGMTGYELLKKIKQESSVFREIPVVIMSSENILTRIDRCLEEGAEDFLLKPVKLSDVRRLKDFIMRGEVKEGERTSNKRRRSDDCSQSLSTTFSPMSHPCDTCSSVLSVSPLSPSTLSSKKSRL. 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01483 130 MobiDBLite consensus disorder prediction 74 91 - -
Seca12g01483 130 Pfam Response regulator receiver domain 2 64 IPR001789 GO:0000160
Seca12g01483 130 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 96 IPR045279 GO:0009736
Seca12g01483 130 Gene3D - 1 106 - -
Seca12g01483 130 ProSiteProfiles Response regulatory domain profile. 1 71 IPR001789 GO:0000160
Seca12g01483 130 SUPERFAMILY CheY-like 2 72 IPR011006 -
Seca12g01483 130 MobiDBLite consensus disorder prediction 74 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01483 Seca-Chr12 15022441 15025084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01483 1 85 Response Regulator Gene Family AT3G48100 77.647 3.74e-41 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca12g01483 Response_reg 2.1e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01483 K14492 - gmx:100527518 187.193