Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01476 ATGTCACGCGCCAGCACCGCCGCGGACTCCGCCGTCTCCGGCGAGATCATGCTCTTCGGAGTTAGAGTCGTAGTTGATTCCATGAGGAAGAGCGTGAGTATGAACAACCTCTCACAGTACGAGCATCCTCAAGATACCACCAACAACAATAACAACAGCAAAGACGTTCTCGCCGCCGGTTACGCCTCCGCCGATGAAGCTGTTCCTCATAACTCCAGCAGGCACCGCGAGCGCGAGCGCAAGCGAGGGATTCCGTGGACGGAGGAAGAGCACAAGCTGTTCCTGGTAGGATTGCAGAAAGTAGGGAAAGGCGATTGGAGGGGAATCTCAAGGAACTACGTGAAAACGCGAACGCCAACACAAGTTGCTAGTCATGCTCAGAAGTACTTTCTCCGCCGAAGTAATCTCAATCGCCGTCGCCGTAGATCCAGTCTCTTTGATATCACTACCGACACGGTCTCTGCAATCCCAATGGAGGAAGAACAGGTCCAGAATCAAGATAGCGTGTCCCATTCGTCACAGCCTGTGTGCCCTGAAACTAGCAAAATCAATGGATTTCCTATGGTGCCGGTATATCAGTTGGGTGTTAATGATAGTCCAATGGAAGAACTCTCTCTGGGACAAGGAAACGTGAAACACAATGTGCCAACCAAGCTATTCCGTCCAATTCCTGCTGTTCCAGATCCTAAAGCTTCCACCATGTCTGATATCACCTCCAGTTCGAGCTCAGCTGTTGACCCGCCAACACTTTCCCTCGGGCTATCCTTCTCATCTGATCAAAGGCAAACATCATCAAGACATTCAGCTTTACATGCAATTCCATGTCCCAATAATGGAGATAGCATCATTAGTGTTGCTTGA 861 0.5029 MSRASTAADSAVSGEIMLFGVRVVVDSMRKSVSMNNLSQYEHPQDTTNNNNNSKDVLAAGYASADEAVPHNSSRHRERERKRGIPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAIPMEEEQVQNQDSVSHSSQPVCPETSKINGFPMVPVYQLGVNDSPMEELSLGQGNVKHNVPTKLFRPIPAVPDPKASTMSDITSSSSSAVDPPTLSLGLSFSSDQRQTSSRHSALHAIPCPNNGDSIISVA. 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01476 286 FunFam transcription factor MYB1R1 84 135 - -
Seca12g01476 286 CDD SANT 85 130 IPR001005 -
Seca12g01476 286 NCBIfam myb-like DNA-binding domain, SHAQKYF class 81 132 IPR006447 GO:0003677
Seca12g01476 286 Pfam Myb-like DNA-binding domain 85 130 IPR001005 -
Seca12g01476 286 MobiDBLite consensus disorder prediction 220 273 - -
Seca12g01476 286 Gene3D - 84 136 - -
Seca12g01476 286 SUPERFAMILY Homeodomain-like 80 135 IPR009057 -
Seca12g01476 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 134 IPR017930 -
Seca12g01476 286 SMART sant 82 132 IPR001005 -
Seca12g01476 286 PANTHER TRANSCRIPTION FACTOR KUA1 8 228 - -
Seca12g01476 286 MobiDBLite consensus disorder prediction 232 271 - -
Seca12g01476 286 ProSiteProfiles Myb-like domain profile. 78 130 IPR001005 -
Seca12g01476 286 ProSiteProfiles SANT domain profile. 86 134 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01476 Seca-Chr12 14883425 14885303 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca12g01476 Myb_DNA-binding 1.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01476 - - psat:127073868 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01476 12 14883425 14885303 Seca4g03169 4 54311824 54314552 PCT