Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca12g01471 | CTCTCCCTTTCATTAGCTCAGACCCCTACTTTTCTTTACCAGAATTGCTCAACCAACAGAACCACCACCAACAGCGCCTTTCAATTGGATGTCAGGACCCTTTTATCTTCACTATCTTCCAACGCCACTGCTAACAATGAATTCTACAACACCACAGTCACTGGCAGAAACCCCTCCGACACAGTCTATGGTTTGTTCATGTGCAGGGGTGACGTGTCCTCTCAGCAATGTGGACAGTGTGTGGTAAACGCAACCCATAAACTAACATCAGACTCAGAGTGCTCCTTGTCCAAACAGGCTGTGATTTGGTATGACGAATGCATGGTTCGGTATTCAAATCGCTCTTTCTTCTCCATGGGAGACATAAGGCCTGGTGTTTTCATGTGGAACACCGCCAATATCTCAGACCAGGAAAGCTTCATGCGTTTGTTGTTCACCACCATGAACAAAACAGCAGATAAAGCAGCTAACTTTCCTATTGGTGCTAAGAAGTATGCCACAGAGGAAGCAAACATATCTGGATTTCAAACCCTTTATTGTCTGGCTCAGTGCACAGAAGACTTGTCACCCCAAGTTTGCAGAAGGTGTCTTAGTGAGGCGATAGGGAGGCTTCCAAGGTGCTGTGAAGGAAAGCAAGGAGGGAGAGTTCTATTTTCAAGCTGTAACATTAGGTATGAATTGTACCCTTTCTATCGCTCCACTGTTTCCGCACCAACGCCTTCACCAGCAGAGCTTGTTCCTCCAACCAATTCTTCTAATTCCGGAGGAAGTAGTGGGATCTCATCAGGGGCAATCGTTGCAATTGTGGTTCCAATTACAGTGGCTGTGCTGCTATTTATAGTGGGTGTTTGTTTCTTAAGTAAAAGAGCAGGGAAGAAGAGCGACTCTGCTGCGCAAGACCAAAAAACTGGAACTGAGATCACCACCGCGGAATCCTTGAGATTTGATTTCAGTACAATTGAAGCAGCCACAAACAAATTCTCTGAAGCTAATAAGCTAGGTGAAGGTGGATTTGGTGAGGTTTACAAGGGCTTGCTTCCAAGTGGACAAGAAGTAGCTGTCAAGAGACTCTCTAAAAGCTCTGGCCAAGGTGGGGAAGAATTTAAGAATGAAGTTGAGCTGGTTGCCAAGCTTCAACATAGAAATTTAGTGAGGCTTCTTGGATTTTGCTTGGAAAGAGAAGAAAAGTTGCTTGTTTACCAATTTGTAGCCAACAAAAGCCTTGACTATATCCTTTTTGGTAGGTTCTTCTTAACTGAATTCTTTATACTGTGTTACACGGAAGCAGACCTTCAGAAACTAAGCCATGCATTAAGAATACTTTCTGAAACTGAGAAACAGCTTAGAATTTCAAAAAATCAAACAACATGGTTCACTGTAGCTCTCCTACTGTTAAGCTCTGTAGATTATCCTTCCATGGATGCAGATGATACCAAGTTGTGTTTGAAAGGTGCATGCAATGGAGGGAAGAGTTTGGAGCATGTTGCTACAGATCAATGTGATAACAGTTCATATAGATTAGGAGTGCTGGAGGATCACAAAGGAACATTGGATTCCATATGGTATAAAGCTACAGAGATATGTCAATCTAGTCACTGA | 1599 | 0.4328 | LSLSLAQTPTFLYQNCSTNRTTTNSAFQLDVRTLLSSLSSNATANNEFYNTTVTGRNPSDTVYGLFMCRGDVSSQQCGQCVVNATHKLTSDSECSLSKQAVIWYDECMVRYSNRSFFSMGDIRPGVFMWNTANISDQESFMRLLFTTMNKTADKAANFPIGAKKYATEEANISGFQTLYCLAQCTEDLSPQVCRRCLSEAIGRLPRCCEGKQGGRVLFSSCNIRYELYPFYRSTVSAPTPSPAELVPPTNSSNSGGSSGISSGAIVAIVVPITVAVLLFIVGVCFLSKRAGKKSDSAAQDQKTGTEITTAESLRFDFSTIEAATNKFSEANKLGEGGFGEVYKGLLPSGQEVAVKRLSKSSGQGGEEFKNEVELVAKLQHRNLVRLLGFCLEREEKLLVYQFVANKSLDYILFGRFFLTEFFILCYTEADLQKLSHALRILSETEKQLRISKNQTTWFTVALLLLSSVDYPSMDADDTKLCLKGACNGGKSLEHVATDQCDNSSYRLGVLEDHKGTLDSIWYKATEICQSSH. | 533 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca12g01471 | 532 | Gene3D | Phosphorylase Kinase; domain 1 | 287 | 402 | - | - | |
Seca12g01471 | 532 | ProSitePatterns | Protein kinases ATP-binding region signature. | 333 | 355 | IPR017441 | GO:0005524 | |
Seca12g01471 | 532 | Pfam | Protein tyrosine and serine/threonine kinase | 330 | 415 | IPR001245 | GO:0004672|GO:0006468 | |
Seca12g01471 | 532 | SUPERFAMILY | Protein kinase-like (PK-like) | 308 | 427 | IPR011009 | - | |
Seca12g01471 | 532 | Gene3D | - | 8 | 116 | IPR038408 | - | |
Seca12g01471 | 532 | Gene3D | - | 126 | 230 | IPR038408 | - | |
Seca12g01471 | 532 | ProSiteProfiles | Protein kinase domain profile. | 327 | 532 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca12g01471 | 532 | ProSiteProfiles | Gnk2-homologous domain profile. | 122 | 230 | IPR002902 | - | |
Seca12g01471 | 532 | FunFam | Cysteine-rich receptor-like protein kinase 25 | 124 | 230 | - | - | |
Seca12g01471 | 532 | ProSiteProfiles | Gnk2-homologous domain profile. | 9 | 116 | IPR002902 | - | |
Seca12g01471 | 532 | FunFam | Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 | 9 | 115 | - | - | |
Seca12g01471 | 532 | Pfam | Salt stress response/antifungal | 16 | 113 | IPR002902 | - | |
Seca12g01471 | 532 | Pfam | Salt stress response/antifungal | 133 | 228 | IPR002902 | - | |
Seca12g01471 | 532 | FunFam | Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 | 288 | 402 | - | - | |
Seca12g01471 | 532 | PANTHER | CYSTEINE-RICH REPEAT SECRETORY PROTEIN | 6 | 240 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca12g01471 | Seca-Chr12 | 14849646 | 14851930 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca12g01471 | 4 | 413 | Receptor kinase-like Gene Family | AT4G05200 | 49.282 | 1.93e-123 | 376 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_DLSV | Seca12g01471 | PK_Tyr_Ser-Thr | 2.1e-14 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca12g01471 | - | - | gmx:100789354 | 594.349 |