Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01471 CTCTCCCTTTCATTAGCTCAGACCCCTACTTTTCTTTACCAGAATTGCTCAACCAACAGAACCACCACCAACAGCGCCTTTCAATTGGATGTCAGGACCCTTTTATCTTCACTATCTTCCAACGCCACTGCTAACAATGAATTCTACAACACCACAGTCACTGGCAGAAACCCCTCCGACACAGTCTATGGTTTGTTCATGTGCAGGGGTGACGTGTCCTCTCAGCAATGTGGACAGTGTGTGGTAAACGCAACCCATAAACTAACATCAGACTCAGAGTGCTCCTTGTCCAAACAGGCTGTGATTTGGTATGACGAATGCATGGTTCGGTATTCAAATCGCTCTTTCTTCTCCATGGGAGACATAAGGCCTGGTGTTTTCATGTGGAACACCGCCAATATCTCAGACCAGGAAAGCTTCATGCGTTTGTTGTTCACCACCATGAACAAAACAGCAGATAAAGCAGCTAACTTTCCTATTGGTGCTAAGAAGTATGCCACAGAGGAAGCAAACATATCTGGATTTCAAACCCTTTATTGTCTGGCTCAGTGCACAGAAGACTTGTCACCCCAAGTTTGCAGAAGGTGTCTTAGTGAGGCGATAGGGAGGCTTCCAAGGTGCTGTGAAGGAAAGCAAGGAGGGAGAGTTCTATTTTCAAGCTGTAACATTAGGTATGAATTGTACCCTTTCTATCGCTCCACTGTTTCCGCACCAACGCCTTCACCAGCAGAGCTTGTTCCTCCAACCAATTCTTCTAATTCCGGAGGAAGTAGTGGGATCTCATCAGGGGCAATCGTTGCAATTGTGGTTCCAATTACAGTGGCTGTGCTGCTATTTATAGTGGGTGTTTGTTTCTTAAGTAAAAGAGCAGGGAAGAAGAGCGACTCTGCTGCGCAAGACCAAAAAACTGGAACTGAGATCACCACCGCGGAATCCTTGAGATTTGATTTCAGTACAATTGAAGCAGCCACAAACAAATTCTCTGAAGCTAATAAGCTAGGTGAAGGTGGATTTGGTGAGGTTTACAAGGGCTTGCTTCCAAGTGGACAAGAAGTAGCTGTCAAGAGACTCTCTAAAAGCTCTGGCCAAGGTGGGGAAGAATTTAAGAATGAAGTTGAGCTGGTTGCCAAGCTTCAACATAGAAATTTAGTGAGGCTTCTTGGATTTTGCTTGGAAAGAGAAGAAAAGTTGCTTGTTTACCAATTTGTAGCCAACAAAAGCCTTGACTATATCCTTTTTGGTAGGTTCTTCTTAACTGAATTCTTTATACTGTGTTACACGGAAGCAGACCTTCAGAAACTAAGCCATGCATTAAGAATACTTTCTGAAACTGAGAAACAGCTTAGAATTTCAAAAAATCAAACAACATGGTTCACTGTAGCTCTCCTACTGTTAAGCTCTGTAGATTATCCTTCCATGGATGCAGATGATACCAAGTTGTGTTTGAAAGGTGCATGCAATGGAGGGAAGAGTTTGGAGCATGTTGCTACAGATCAATGTGATAACAGTTCATATAGATTAGGAGTGCTGGAGGATCACAAAGGAACATTGGATTCCATATGGTATAAAGCTACAGAGATATGTCAATCTAGTCACTGA 1599 0.4328 LSLSLAQTPTFLYQNCSTNRTTTNSAFQLDVRTLLSSLSSNATANNEFYNTTVTGRNPSDTVYGLFMCRGDVSSQQCGQCVVNATHKLTSDSECSLSKQAVIWYDECMVRYSNRSFFSMGDIRPGVFMWNTANISDQESFMRLLFTTMNKTADKAANFPIGAKKYATEEANISGFQTLYCLAQCTEDLSPQVCRRCLSEAIGRLPRCCEGKQGGRVLFSSCNIRYELYPFYRSTVSAPTPSPAELVPPTNSSNSGGSSGISSGAIVAIVVPITVAVLLFIVGVCFLSKRAGKKSDSAAQDQKTGTEITTAESLRFDFSTIEAATNKFSEANKLGEGGFGEVYKGLLPSGQEVAVKRLSKSSGQGGEEFKNEVELVAKLQHRNLVRLLGFCLEREEKLLVYQFVANKSLDYILFGRFFLTEFFILCYTEADLQKLSHALRILSETEKQLRISKNQTTWFTVALLLLSSVDYPSMDADDTKLCLKGACNGGKSLEHVATDQCDNSSYRLGVLEDHKGTLDSIWYKATEICQSSH. 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01471 532 Gene3D Phosphorylase Kinase; domain 1 287 402 - -
Seca12g01471 532 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Seca12g01471 532 Pfam Protein tyrosine and serine/threonine kinase 330 415 IPR001245 GO:0004672|GO:0006468
Seca12g01471 532 SUPERFAMILY Protein kinase-like (PK-like) 308 427 IPR011009 -
Seca12g01471 532 Gene3D - 8 116 IPR038408 -
Seca12g01471 532 Gene3D - 126 230 IPR038408 -
Seca12g01471 532 ProSiteProfiles Protein kinase domain profile. 327 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01471 532 ProSiteProfiles Gnk2-homologous domain profile. 122 230 IPR002902 -
Seca12g01471 532 FunFam Cysteine-rich receptor-like protein kinase 25 124 230 - -
Seca12g01471 532 ProSiteProfiles Gnk2-homologous domain profile. 9 116 IPR002902 -
Seca12g01471 532 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 9 115 - -
Seca12g01471 532 Pfam Salt stress response/antifungal 16 113 IPR002902 -
Seca12g01471 532 Pfam Salt stress response/antifungal 133 228 IPR002902 -
Seca12g01471 532 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 288 402 - -
Seca12g01471 532 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 6 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01471 Seca-Chr12 14849646 14851930 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01471 4 413 Receptor kinase-like Gene Family AT4G05200 49.282 1.93e-123 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca12g01471 PK_Tyr_Ser-Thr 2.1e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01471 - - gmx:100789354 594.349