Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01464 ATGGAACCTCCTCTCATCAACGACTCCACATTCTCCTCCGCTAACCCTTCTTTGTCTGAGATTTGGCCTATCCATTTCCCTCTTGACTCTCACAACAACAACTCCCTCTCTCACCTCAATCCTCTTCGCAGGAAAAGAAACAACAACGACCCTCCCAACCACTCGAGTGATTGTGGCAATAAACATATGAAGCTAGGAGGAGGATCCGTGGAGGACGAAAACGGTGCGTTCAAAGCGGAAGGAGATGCAACTTCAGTAGCCGGTAACAAGTTACCTGAACAACAAAGTGGTAAACCTTCTGAACAGCCACCTAAGCAAGACTATATACACGTGAGAGCCAGAAGAGGCCAAGCTACCGATAGTCACAGTCTCGCTGAGAGAGCAAGAAGAGAAAAGATCAGTGAGAGGATGAAAATTCTTCAAGATTTAGTCCCTGGTTGTAACAAGGTAATTGGTAAAGCACTTGTCCTGGATGAGATAATAAATTACATACAGTCACTGCAGCGTCAGGTTGAGTTCCTTTCGATGAAGCTTGAAGCAGTTAATTCGAGATTGACCATGAACCCTACTATTGAATGTTTTCCATCAAAAGATGTTGTTACTCAGCCATTTGACCTTGCTGGAATAATATTTGGATCACAAGCAAGGAGGGGGTATGCTCAGGGATCACAACCTGGATGGCTGCATATGCAGATAGCTGGTGGTTTTGATAAAGCAACATGA 723 0.4467 MEPPLINDSTFSSANPSLSEIWPIHFPLDSHNNNSLSHLNPLRRKRNNNDPPNHSSDCGNKHMKLGGGSVEDENGAFKAEGDATSVAGNKLPEQQSGKPSEQPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLTMNPTIECFPSKDVVTQPFDLAGIIFGSQARRGYAQGSQPGWLHMQIAGGFDKAT. 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01464 240 MobiDBLite consensus disorder prediction 36 75 - -
Seca12g01464 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 115 187 IPR036638 GO:0046983
Seca12g01464 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 117 167 IPR011598 GO:0046983
Seca12g01464 240 FunFam Basic helix-loop-helix transcription factor 114 187 - -
Seca12g01464 240 Coils Coil 164 184 - -
Seca12g01464 240 CDD bHLH_AtBPE_like 107 190 - -
Seca12g01464 240 SMART finulus 123 173 IPR011598 GO:0046983
Seca12g01464 240 Pfam Helix-loop-helix DNA-binding domain 121 168 IPR011598 GO:0046983
Seca12g01464 240 Gene3D - 114 191 IPR036638 GO:0046983
Seca12g01464 240 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 57 210 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01464 Seca-Chr12 14796483 14799817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01464 1 240 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 47.387 2.11e-73 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca12g01464 HLH 1.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01464 - - gmx:100799646 365.155