Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01453 ATGGACGGCGGCGATCCTTCCCTGTCAGATAAGGAGGAAGAGGAGGAGTACGATGCGGCAGACATTCTGTCGCGAGTTCGACTCGTCGATGCTCCCATACTCTTGTTCGTTTGCTTCCACAAAGCTCTGCGCTCTGAACTCGATCAGCTTCGTCGCTTGGCGGAAACGGCGTCGTTGGAGGACGACTCGCGCCGTTGCCGAGAAATAATCCTTAAGCTTCAACGAAGATTCCAGTTTCTGAAACTAACTCATAAGTATCATTGCGCTGCAGAAGACGAGGTTATCTTCCTTGCACTGGATATACATGTGAAAAATGTGGTATGTACATATTCCTTAGAACATAATAGCACCAATGACCTTTTCGGCTCTATCTTTCGCTTCTTGGATGAGCTGATGGGTCCTAATGAGAATACTACCAAGCTGTTTCAAGAACTTGTTTACTGCATTGGCATCTTGCAAACCTCCATCTACCAGCATATGCTGAAAGAAGAAGAGCAGGTTTTTCCTCTGTTGATCCAGAAATTATCTACCAAAGAACAGGCCTCACTTGTGTGGCAATTCATATGTAGTGTTCCTATAATGTTGCTGGAGGAAGTTTTGCCATGGATGGTATCCTTCCTCTCTGCAGACCAACAAACAGAAGTTACTCAGTGTTTAAATGAAATTGCACCAATGGAAAAAGCACTGCAAGAGGTTTTGGTTTCTTGGCTTGGAAACAACAAACAAACCTTCACCGAGACCTATTTTCAGAGTGAAGAATTTCAAAGTGTTGATGGATTCCTACATATAGAAAGATCACTTGGGCTGAGTTCTTGCAATAGGAGCTCTGAAGAAATTTCAAGTAAGATGAAAGTGAATGAACAAGAAATAGAAGATGGGGTCAACCAGGTTAATGTTCTTCATCTTTGGCATAATGCCATCAAGAAAGATTTGAAAGAAATTCTGAAAGAACTTTATCTACTAAGAAACTCCAGCTGTTTTCAGAATATAGATTCAATACTTATCCAGCTAAAATTCTTTGCCGATGTCCTCATCTTCTACTGCAATGCTCAGAAGAAACTCTTTCATCCTATACTGAATAAGATTACTTATGACCATTTGTCCAAGTCCATTGAACAATTTCTTGGTGAAAATCACATTGAAGATATACATCAGTTGATATTCTACAACTCAGAAAGTGGAATGCCTTTGACCAAATTCATAGAGAAGCTTTGCAGAAAACTTGAATCATTTGTATCAGGAGTCAACAGACAATTTGCTTTTCAAGAAATTGAGGTATTTCCTGTCATTGGAAAGAACTGCAGAAATGGATTGCAAGTGAGACTTCTAAGCTTGAGCCTGAATATGATGCCACTTGGGTTACTAAAATGTGTCATAACTTGGTTTTCAGTTCACTTGTCTGAAAAAGAATCCAGGTCCATTCTCTATTGCATAAAGAAAGGAAATAATTCTGTCTGTAAAGCTTTTGCACCACTGATACATGAGTGGTTCCGCATTGGTTATTCAGGTAAAACCTCCATTGAAAAATTTCGGCAAGACTTGCAGAATATGTTCAAAAGAAGAAGCTCTTTTTCACCTGAGAAAATGAAGGAAGGTTGTGGGTTTTCTTTCTTAAGTTCTGATAAGCAGCCTCATAAAAACACTGGCAAGTCCTATTCCTCATCTTCTGGATCCAACAATGTGAACAATTATGAGACACCATACTCCACAGGAATTAATCTGCATATATTTTTCCCTGCCACTGCTGTGAAGTTACATCAGCATCCTAGATTTCATCTAGCAAATTGTTCTTCAATTTCCTTTCTTGACGATCCAAAACCAATTGACCTAGTGTTTTTTTTTCACAAGGCTATGAAGAAAGATTTGGATTACTTAGTTCTTGGCTCAGCTCAGTTAGAAGAAAATGAAAATTTGTTGATGGATTTCCACAAACGATTCCATCTCATATGTTTTCTTCATCAAATCCACAGTGATGCAGAGGATGAGATAGTATTTCCAGCCTTGGAGGCAACGGGTAAACTCAAAAACATTAGCCATGCCTACACCTTTGATCACAAACATGAAATTGGGCACTTCAATAAAATATCCCGCATCCTTGATAAGATGTCTGAATTACATCTTTCAGTTTCTACTCTTGATTCAAAAGTAAGGGAGAAGAGAATATTAAGGCATCATCATTTATGCAGGAAGCTGCAAGAAATGTGCAAATCAATGCATAAGTTACTTTCTGATCATATAAACCGTGAGGAAATAGAAATTTGGCCAATAATTAGGGAATTCTTCTCGAATAAAGAGCAAGGGAAGATCATAGGATGCATGCTTGGAAGAATAAGAGCAGAAATATTACAAGATATGATACCTTGGCTAATGGCATCTTTAACACAGGAAGAACAACGTGTTTTAATGTTCTTATGGTCCATGGCTACTAAAAATACAATGTTTGATGAATGGTTAGGTGAATGGTGGCATGGGTACAGTTTAGCTAAGGTAACAGAGGGATCAAATGATGCCCCTCTACAGACTGTTGAGCCATTGGAGATTATATCCAAATATTTATCTGAAGAAGTTCTTAATGAATTACAAGAAGAATCCTCTGCCAGCAAAGGCATAAATTTTTTGCAGAAGGATCATATTGGTGATAATGTTGAGCTGTCTAACTACAATTTTGATGATAGTGATAAGGTTCATTATACAGAACAAAATAATATTCAATGTTCAAAATCAAAATGCACAAATCAATTTCATGATAATAGCAAACAAACCTTCAATGAAACAACGCATGTCACAAATCCAATATACAATGAAGGTCAGCCATTTCAATTATGTGACAAGTCTGGGCATTATGACCGACTTCTGAAATTGAGTCAAGATGATCTGGAGATGGTGATAAGAAGGGTGAATCGTGACTCTAGCTTAGATCCTCAAAAAAAGGCATACATAATCCAGAACCTACTAATGAGCCGTTGGATTATTAGACAACAGATCTCTTCTATAGAAGTCAATGTCAAAAGTGATGGACAGGAATTTCCTGGAAAGCATCCATCTTACAGAGACCCTCTCAAGCTAATTCATGGTTGCAAACACTACAAGAGAAACTGTAAGCTTTTTGCTCCCTGTTGCAACCAACTTCATACTTGCATACATTGCCATAATGAGGTGTCAGATCATTCAATTGACAGAAAATCTATTACAAAGATGATGTGCATGAAGTGCCTGGTGATTCAACCAATCAATGCTACATGCTCAACAGCATCTTGCAGTAATTTATCCATGTCAAAATATTACTGCAAGATCTGCAAATTATTTGATGATGAAAGGGAAATTTACCACTGTCCCTATTGCAACCTGTGCCGAGTTGGAAAGGGTTTGGGTGTAGACTATTTCCACTGTATGAATTGCAATGCTTGTATGTCTCGTTCTCTTATGATACATACATGCAGGGAGAAATCTTTAGAGGATAACTGTCCAATTTGTCATGAATATATCTTCACATCCTGCTCTCCTGTAAAAGCCCTCCCATGTGGTCATGTGATGCACTCAACATGTTTTCAGGAATATACCTGCTTTAACTATACCTGTCCAATATGTGGCAAATCACTTGGAGACATGCAGGTCAGTTATTATTTGTTATTACATATCCTGTATTAA 3648 0.3819 MDGGDPSLSDKEEEEEYDAADILSRVRLVDAPILLFVCFHKALRSELDQLRRLAETASLEDDSRRCREIILKLQRRFQFLKLTHKYHCAAEDEVIFLALDIHVKNVVCTYSLEHNSTNDLFGSIFRFLDELMGPNENTTKLFQELVYCIGILQTSIYQHMLKEEEQVFPLLIQKLSTKEQASLVWQFICSVPIMLLEEVLPWMVSFLSADQQTEVTQCLNEIAPMEKALQEVLVSWLGNNKQTFTETYFQSEEFQSVDGFLHIERSLGLSSCNRSSEEISSKMKVNEQEIEDGVNQVNVLHLWHNAIKKDLKEILKELYLLRNSSCFQNIDSILIQLKFFADVLIFYCNAQKKLFHPILNKITYDHLSKSIEQFLGENHIEDIHQLIFYNSESGMPLTKFIEKLCRKLESFVSGVNRQFAFQEIEVFPVIGKNCRNGLQVRLLSLSLNMMPLGLLKCVITWFSVHLSEKESRSILYCIKKGNNSVCKAFAPLIHEWFRIGYSGKTSIEKFRQDLQNMFKRRSSFSPEKMKEGCGFSFLSSDKQPHKNTGKSYSSSSGSNNVNNYETPYSTGINLHIFFPATAVKLHQHPRFHLANCSSISFLDDPKPIDLVFFFHKAMKKDLDYLVLGSAQLEENENLLMDFHKRFHLICFLHQIHSDAEDEIVFPALEATGKLKNISHAYTFDHKHEIGHFNKISRILDKMSELHLSVSTLDSKVREKRILRHHHLCRKLQEMCKSMHKLLSDHINREEIEIWPIIREFFSNKEQGKIIGCMLGRIRAEILQDMIPWLMASLTQEEQRVLMFLWSMATKNTMFDEWLGEWWHGYSLAKVTEGSNDAPLQTVEPLEIISKYLSEEVLNELQEESSASKGINFLQKDHIGDNVELSNYNFDDSDKVHYTEQNNIQCSKSKCTNQFHDNSKQTFNETTHVTNPIYNEGQPFQLCDKSGHYDRLLKLSQDDLEMVIRRVNRDSSLDPQKKAYIIQNLLMSRWIIRQQISSIEVNVKSDGQEFPGKHPSYRDPLKLIHGCKHYKRNCKLFAPCCNQLHTCIHCHNEVSDHSIDRKSITKMMCMKCLVIQPINATCSTASCSNLSMSKYYCKICKLFDDEREIYHCPYCNLCRVGKGLGVDYFHCMNCNACMSRSLMIHTCREKSLEDNCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTCFNYTCPICGKSLGDMQVSYYLLLHILY. 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01453 1215 Gene3D nmb1532 protein domain like 31 189 - -
Seca12g01453 1215 Gene3D nmb1532 protein domain like 603 774 - -
Seca12g01453 1215 FunFam Zinc finger protein-related isoform 1 1150 1199 - -
Seca12g01453 1215 Pfam CHY zinc finger 1026 1101 IPR008913 GO:0008270
Seca12g01453 1215 Coils Coil 40 60 - -
Seca12g01453 1215 SMART ring_2 1155 1196 IPR001841 -
Seca12g01453 1215 CDD Hr-like 609 755 - -
Seca12g01453 1215 Pfam Hemerythrin HHE cation binding domain 40 171 IPR012312 -
Seca12g01453 1215 ProSiteProfiles Zinc finger RING-type profile. 1155 1196 IPR001841 -
Seca12g01453 1215 CDD RING-H2_Pirh2-like 1154 1197 - -
Seca12g01453 1215 SUPERFAMILY RING/U-box 1143 1201 - -
Seca12g01453 1215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1148 1198 IPR013083 -
Seca12g01453 1215 SUPERFAMILY CHY zinc finger-like 1017 1082 IPR037274 GO:0008270
Seca12g01453 1215 SUPERFAMILY Zinc hairpin stack 1093 1146 IPR037275 -
Seca12g01453 1215 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 652 1206 - -
Seca12g01453 1215 ProSiteProfiles Zinc finger CTCHY-type profile. 1091 1154 IPR017921 -
Seca12g01453 1215 ProSiteProfiles Zinc finger CHY-type profile. 1019 1088 IPR008913 GO:0008270
Seca12g01453 1215 MobiDBLite consensus disorder prediction 537 558 - -
Seca12g01453 1215 CDD Hr-like 39 169 - -
Seca12g01453 1215 MobiDBLite consensus disorder prediction 540 558 - -
Seca12g01453 1215 Pfam Ring finger domain 1153 1196 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01453 Seca-Chr12 14651878 14661953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01453 603 817 C2H2 Transcription Factor Family AT3G18290 24.215 9.67e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01453 K16276 - gmx:100802706 2042.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01453 12 14651878 14661953 Seca12g01453 12 14651878 14661953 ECH