Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01452 ATGACCCTAAAGGGTGGTACAACCCAGGCTTGTGCTGCATGCAAATTCCAGAGAAGAAAGTGCACTCCTGAGTGTGTTCTAGCCCCATATTTCCCTGCTGACCAACCCAATGTATTTAAAAATGTCCACAAGCTGTTTGGAGTTAGCAACATCGTAAAGATATTAAAGATCTTGGAGCCTAGTCAGAAGAAGATAGCTATGGATTCTATTATTATTCAAGCAAATTACAGGGACAAGTACCCTGTTCATGGTTGTTGGGAGGAAATCTGCAGGCTACAATACCAAATATGGGTGATGGAAGAAGAGCTTCATGCAGTTTATCAACAGCTTGAAATGTGTAGGCAACAGCAACACAATCAGCAGCAGCAGCATCAAGGTCCTTCCTTGCCTGTGCCTGATGATGTGACTTCACAATTAGAATTGGGAATGGCACCACGTGCTAATGCCCTCCCACTCTTTAATCATACCCCACAACAACCACAGACTTACAACACAGCAGCTGCTTTGTCTGTGTCACAACAACATTCCTACTCCAACAGCAACAGTGTGGATTATAACTCCCTGTACTTGGACTCCAAGGATAATGCCACAAATCCTTTGTGGGTTCAGTACCCCTATGCAAATAACAATAGCAATTCAATAGCATTGCAAACTCAGTTGGTTGCTTCACAGCCACTAGGCATCCAACAAGAAGTTGTTGAAGATTATGATGAGATGCATCCATTTTTTGATACAGTTGATGATAGGCAATCATACATTTATTCAAAGGAGGCTTATGAATCAAGTTCAGAAGAATCACTGAAAGATACGAGAAAGTGCACTGAGCATGTTTCTGAGAATGAACTGAAGAGTGCTGCTGCATGCTTCAGCCTTACCAGTGTCAACTGA 888 0.4245 MTLKGGTTQACAACKFQRRKCTPECVLAPYFPADQPNVFKNVHKLFGVSNIVKILKILEPSQKKIAMDSIIIQANYRDKYPVHGCWEEICRLQYQIWVMEEELHAVYQQLEMCRQQQHNQQQQHQGPSLPVPDDVTSQLELGMAPRANALPLFNHTPQQPQTYNTAAALSVSQQHSYSNSNSVDYNSLYLDSKDNATNPLWVQYPYANNNSNSIALQTQLVASQPLGIQQEVVEDYDEMHPFFDTVDDRQSYIYSKEAYESSSEESLKDTRKCTEHVSENELKSAAACFSLTSVN. 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01452 295 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Seca12g01452 295 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Seca12g01452 295 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01452 Seca-Chr12 14649184 14650832 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01452 1 258 AS2 family AT3G47870 39.423 8.94e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca12g01452 LOB 2.9e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01452 - - lang:109357116 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01452 12 14649184 14650832 Seca12g01452 12 14649184 14650832 ECH