Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01450 ATGGGACACAAAAAGCGAAACCCTGCTGTTCGTTCGAAACATTCTCCGGCGGCTTCTCCGGTGGCGCAATCGGCCATCGGCGGAGCCGCCAATGGTCCCACTTTTCCCGAACCTGACTCCTCTTGCTTCAATGTTTCCGATCACAATATCCCTAACCCTAGCAAGATCGAATTGGCTTCTCCTCCTCCTCCTCCTTCTCCTCAATCTGAGGGTTCCGATTACTCCTCAATTAAGCTCGAATGCGAGCGAGCCCTCACCACGTATCGGCGCGGTAACCACAATAGGGCAATGAAGCTCATGAAGGAGTTGTGCACGAAGGAGGAGGGCTCGTCTCACTCGGCGTTTGTTCACCGAGTTCACAGCTTCGTGTGTTATAAAGTGGCGTCGGCTATTACCGACCCGGCCGCGAAGCAACGGCATTTGAAGAACGCTATTGAGTCTGCGCGGAGAGCGGTTGAGCTTTCGCCGAATTCGGTTGAGTATGCGCATTTCCACGCCACTGTGTTGTTGGAGGCAGCAACTGAGGGGAAAGACTATGAGGAGGTGGTGCACGAGTGTGAGAGGGGGCTTGCCGTTGAAAACCCCACTGATCCTTTGAAGGAGACCTTGCAGGATGAGAGTGAGCAGAAAGTGTCCACTGTGGAAGGACGGATAGCACATGTGCAGAATGAGTTGCGGCAGCTGATTCAGAAGTCAAATATTGCTTCCTTGTCTTCTTGGATGAAGAATTTGAGTAATGGGGAGGAGAGGTTTCGGTTGATTCCCTTAAGGAGGCCTGCTGAGGACCCGATGGAGGTGAGGTTGGTTCAGACTAGAAGGCCAAATGAGATCAAGAAGGTGACTAAGACACCCGAGGAAAGAAGAAAAGAGATTGAAGTTCGGGTTGCCGCAGCAAGGCTGTTGCAGCAGAAGTCAGAGTCACCCCATTCTCCGAATGAAGGAGATAGGGATGACAGAGCATTGGATTCATCTTCAGGGTCTGGTCAGCGGATAGGTGATAGGCGAAGGCATAGAAAGAATGGCTCTACAGATGAAAGGAGAAATTGGGTGCTGTCATATTGGAATTCTGTGAGTATGGATATGAAGAAGGAGTGGCTTAGGATTAATATTTACGATCTCAAGTCCCACTATGGGTCTTCAAAGGATACTTTGCCAAAAGATATTTTATCAGAAGCTTTGTCTTATGCTGATGCCAATAAAACATGGAAATTTTGGGGTTGCTGCCGTTGTGATCAGAAATTTTCCAATCCAGAATGTCACAGACGGCATATTGTGCAGGATCACATGGAGAGTCTCTCGTTGAAAATGCAAAGACTTTTGCCCCAAAATATTGACAATGAATGGATTGAGATGATTCTTAATTGTTCTTGGAAGCCTTTGGATGTATCAGCTGCAGTTAAAATGCTTGACAATAAAGCAAAATTCAGAAGCTCTTCATTTCCTGAGGATTCATACTTGGGTCATCATACTCAGGACTACGATGATTGTTTTAAAGATGCAAGCAACTCTTCCTATGAGAAGGAAAGTTTAGGCTACAGTCTTCATAATTGTACAACAGCAAGTGGTAATTATTGTAAAACTGCAGAAAGTGATGTCAGAGAAGGTGTCGATGACCATCAATCTATGGCAAATCCTGTTACTGATTGTTGGCCAGTATCTGATGACTCCGAGCGTGCAAAACTTCTGGAGAAAATTCATGCAGTATTTGAGACGCTTATTAGACACAAATGTCTTGCTGCTAGTCATCTTAACAAGGTCATGCAATTTAGTATGGGTGAGATACAAAGTCTTGCTGCCGGTTCTCAACTTCTAAAACATGGTGTAGATCAAACACCAATGTGCATATGCTTTCTGGGAGCTTCACAGCTTAAGAAAATTCTCCAATTTCTGCAGGAAATATCTCATGCTTGTGGGTTGGGCAGATATCCTGATAAAAGTAGTAGTCCCATGAATGATTTGCATAATATTAGTCAAGGTCCTGAGATCAAAGATAAGATTGTTCTTGTTGCAGATGCATCATGCCTCCTTCTGGATGAGTGTTTACTGCCAACACAAGTTACTCCTGGTACGGCCCAGGGGGCTGTCTTGGATGACGTGGCAGCCCCGAGTTCTCCTGATGGAAGTTCACACAACAACGATGCTTTTCTATCCTGGATATTTTCAGGTATGCCTATTGGGGATCAATTGACATTATGGATACGGACCAAAGAAGATAAAATACGTCGAGGAGTGGAAACAGTCCAGACACTTGAGAAGGAGTTTTATCACCTACAAAGCCTATGTGAGAAGAAGTGTGAGCGTATAAGTTATGAGGAAGCACTGCAGACAGTGGAGGATCTTTGTCTTGAAGAAGGTAAGAAGCGGGAAAATGTTAGTGAATTTGTTCAGCGAAGCTATGAGTCTGTCTTAAGAAAGCGGAGAGAAGAGCTCATTGAGAGTGAGAATGATGTGATGTACGTTAGCAATAGGTTTGAGTTGGATGCTATATCAAATGTCTTGCAAGAAGCAGAAGCAATGAATGTTAATCAATTTGGCTATGAGGAAACTTATGCTGGTGCGAGTTCTCATTCTCAGTTATGTGATTTGGAGTCTGGTGAAGAAGATGAATGGAGAATGAAGGACTACTTGCATCAAATGGATGGCTGCATAGAAATTGCTATTCAGAAACTGAAAGAGCACTTATCTATAGAGCTTAGCAAAATTGATGCCCGAATAATTAGAAATGTTACAGAGATGCAGCAGTTGGAACTCAAGCTTGGGCCTATTTGTGCTAATGATTATCGAGCAATATTAGTGCCTTTAGTGAAGTCATACCTAAGGGCACTTTTGGAAGATTTAGCTGAGAAAGATGCAAGAGAGAAATCTGATGCTGCAAGTGAAGCATTTTTAGCTGAACTTGCTCTTGATTCCAAGAAGGTTGTTAAAGGGGGAAGTGAGAACATGAGACATGTAGAGAAGACAAAAGATAAGAAGAAGAATAAAGATCACAGAAAAACAAAAGATTTGAAGGCCACAAGTAGTCATGTGCAGCCCCTGCATCAATCTACAACTCTTGATTCCGATCTAGTTGCTCCTGATAGTGACTTCCAAGATCACGAAGTTGTTTCTATCAATGGTGATGATTTGGAACAACATGAAGAGGAATTTAGACGTAAAATGGAGCTAGAAGAGGAGGAAAAAAAGCTTGAAGAAACTTTGGAATATCAACGAAGGATTGAAAATGAGGCCAAACAGAAGCACCTTGCTGAGCAACAAAAGAAATCATCTGGGTCATATTTAGAGGGAGTGATGGAGAAACTTCAAGATTGTCAATTGAATGTGGTTGCTGATGGCTTAGATACACCTGAACATGTAAGACTACCTATGCAGGAGCAGTTGCCAAAGGAGAATGGGTGCCCAAGCAATCTGCATGGTGTGCTTATTACCACAGCAAATGGATCCATGGAGCCAACTAAATCTTCAGCTGATTCAGCTGCTCAAAAGAGTAATCATTTACATCAGTCAAAAGTTAAACAAGCAGATATGCCTAATGGAATTGTTCCAGAGAATGGTCTACCTTTGTCTGATCGGCGTGCAGTAAAAAAGCATAGACGGCACAAGAATTCTTCCAGAATGGTTGATGGAAAGCATGAATCTGTCTCATTGGAAAAGGAGAATATCGAGGATTCACATACTGACCATCACTTAAAAGAGCAGGCTAAGTTCCATAACAATCAAGATGCTAACAATGTGTGGGAAAACAATGGACCAAAGGTGATGAAAGAATTGCAAGTGGAAGATGAGGAGGAGGAAAGATTCCAAGCTGATCTTAAAATGGCTGTACGCCAAAGCCTGGACACATATCAAGCACGTGGAAATTTGCCTTCAGCTTCCAGTCTAAGAATGTCGCAGAGAACTTCTTCACAAGTAGATTATTCAGGTTTTCCACCTGTGGAAGACTCGACTGAGGATGTTAATAGAGCTACTTTGCTTGGTACTGGACTGAGAAATGAAGTGGGTGAATATAATTGTTTTCTCAATGTTATTATACAGTCATTGTGGCATTTAAGACGCTTTCGGGTGGAATTTCTTGGCAGATCAAGATCAGAACATGATCACGTGGGTGATCCCTGTGTTGTCTGTGCGTTGTATGAAATATTTACTGCACTGGAACTTGCATCAAAGGATTCAAGAAGAGAAGCAGTTGCACCTACTTCCCTGCGGATAGCCCTAAGCAATCTATATCCACATAGTAACTTCTTCCAAGAGGCTCAAATGAATGATGCTTCTGAGGTACTGGCAGTGATATTTGACTGCCTTCATCAATCATTTACTCGTGGTTCAAGTGCTTTTGATGCAGAATCAGTGGAAAGCAACTGCAAGGGGTCTTGGGATTGTGCAAATGGTAGTTGTATAGCACATACACTTTTTGGAATGAATGTTTTTGAACAAATGAACTGCTACCATTGTGGTCTTGAGTCCAGGCATTTGAAGTATACTTCCTTCTTTCACAATATAAATGCCAATGCCCTCCGGACAATGAAGGTTATGTTTGCTGAAAGCTCCTTTGATAAGCTTTTGAATCTTGTGGAGATGAACCATCAACTGGCTTGTGATCTAGAAGTTGGTGGCTGTGGCAAACTCAACCACATCCATCACTTTCTTTCAACTCCACCTCATGTTTTCATGACAGTCCTAGGTTGGCAAAATACATGTGAGAGTGCTGATGATATAACGGCAACTCTGGCAGCCCTGAGCACCAAGATAGATATCAGTGTCCTTTATCGCGGTTTAGATCCTAAAAGCACCCATAACTTGGTTTCAGTGGTATGTATTTGA 4818 0.4305 MGHKKRNPAVRSKHSPAASPVAQSAIGGAANGPTFPEPDSSCFNVSDHNIPNPSKIELASPPPPPSPQSEGSDYSSIKLECERALTTYRRGNHNRAMKLMKELCTKEEGSSHSAFVHRVHSFVCYKVASAITDPAAKQRHLKNAIESARRAVELSPNSVEYAHFHATVLLEAATEGKDYEEVVHECERGLAVENPTDPLKETLQDESEQKVSTVEGRIAHVQNELRQLIQKSNIASLSSWMKNLSNGEERFRLIPLRRPAEDPMEVRLVQTRRPNEIKKVTKTPEERRKEIEVRVAAARLLQQKSESPHSPNEGDRDDRALDSSSGSGQRIGDRRRHRKNGSTDERRNWVLSYWNSVSMDMKKEWLRINIYDLKSHYGSSKDTLPKDILSEALSYADANKTWKFWGCCRCDQKFSNPECHRRHIVQDHMESLSLKMQRLLPQNIDNEWIEMILNCSWKPLDVSAAVKMLDNKAKFRSSSFPEDSYLGHHTQDYDDCFKDASNSSYEKESLGYSLHNCTTASGNYCKTAESDVREGVDDHQSMANPVTDCWPVSDDSERAKLLEKIHAVFETLIRHKCLAASHLNKVMQFSMGEIQSLAAGSQLLKHGVDQTPMCICFLGASQLKKILQFLQEISHACGLGRYPDKSSSPMNDLHNISQGPEIKDKIVLVADASCLLLDECLLPTQVTPGTAQGAVLDDVAAPSSPDGSSHNNDAFLSWIFSGMPIGDQLTLWIRTKEDKIRRGVETVQTLEKEFYHLQSLCEKKCERISYEEALQTVEDLCLEEGKKRENVSEFVQRSYESVLRKRREELIESENDVMYVSNRFELDAISNVLQEAEAMNVNQFGYEETYAGASSHSQLCDLESGEEDEWRMKDYLHQMDGCIEIAIQKLKEHLSIELSKIDARIIRNVTEMQQLELKLGPICANDYRAILVPLVKSYLRALLEDLAEKDAREKSDAASEAFLAELALDSKKVVKGGSENMRHVEKTKDKKKNKDHRKTKDLKATSSHVQPLHQSTTLDSDLVAPDSDFQDHEVVSINGDDLEQHEEEFRRKMELEEEEKKLEETLEYQRRIENEAKQKHLAEQQKKSSGSYLEGVMEKLQDCQLNVVADGLDTPEHVRLPMQEQLPKENGCPSNLHGVLITTANGSMEPTKSSADSAAQKSNHLHQSKVKQADMPNGIVPENGLPLSDRRAVKKHRRHKNSSRMVDGKHESVSLEKENIEDSHTDHHLKEQAKFHNNQDANNVWENNGPKVMKELQVEDEEEERFQADLKMAVRQSLDTYQARGNLPSASSLRMSQRTSSQVDYSGFPPVEDSTEDVNRATLLGTGLRNEVGEYNCFLNVIIQSLWHLRRFRVEFLGRSRSEHDHVGDPCVVCALYEIFTALELASKDSRREAVAPTSLRIALSNLYPHSNFFQEAQMNDASEVLAVIFDCLHQSFTRGSSAFDAESVESNCKGSWDCANGSCIAHTLFGMNVFEQMNCYHCGLESRHLKYTSFFHNINANALRTMKVMFAESSFDKLLNLVEMNHQLACDLEVGGCGKLNHIHHFLSTPPHVFMTVLGWQNTCESADDITATLAALSTKIDISVLYRGLDPKSTHNLVSVVCI. 1606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01450 1605 MobiDBLite consensus disorder prediction 1 74 - -
Seca12g01450 1605 MobiDBLite consensus disorder prediction 37 53 - -
Seca12g01450 1605 MobiDBLite consensus disorder prediction 1285 1312 - -
Seca12g01450 1605 SUPERFAMILY Cysteine proteinases 1326 1604 IPR038765 -
Seca12g01450 1605 Gene3D Cysteine proteinases 1312 1604 - -
Seca12g01450 1605 Pfam Ubiquitin carboxyl-terminal hydrolase 1327 1556 IPR001394 GO:0004843|GO:0016579
Seca12g01450 1605 Gene3D Tetratricopeptide repeat domain 73 230 IPR011990 GO:0005515
Seca12g01450 1605 MobiDBLite consensus disorder prediction 1005 1021 - -
Seca12g01450 1605 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1326 1605 IPR028889 -
Seca12g01450 1605 Coils Coil 211 231 - -
Seca12g01450 1605 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1604 - -
Seca12g01450 1605 MobiDBLite consensus disorder prediction 309 323 - -
Seca12g01450 1605 Pfam Protein of unknown function (DUF629) 351 884 IPR006865 -
Seca12g01450 1605 MobiDBLite consensus disorder prediction 1146 1170 - -
Seca12g01450 1605 Pfam Protein of unknown function (DUF627) 83 194 IPR006866 -
Seca12g01450 1605 MobiDBLite consensus disorder prediction 1285 1308 - -
Seca12g01450 1605 Coils Coil 1039 1075 - -
Seca12g01450 1605 MobiDBLite consensus disorder prediction 975 1021 - -
Seca12g01450 1605 MobiDBLite consensus disorder prediction 300 342 - -
Seca12g01450 1605 MobiDBLite consensus disorder prediction 1146 1214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01450 Seca-Chr12 14632715 14641296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01450 58 1604 C2H2 Transcription Factor Family AT3G47890 55.946 0.0 1613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01450 - - gmx:100799759 2452.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01450 12 14632715 14641296 Seca12g01450 12 14632715 14641296 ECH