Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01446 ATGGGTGAGAAGCCTGAAGTGTTGGAAGCTGTATTGAAGGAAACTGTGGATTTGGAAAACATACCCATTGAAGAGGTTTTTGAGAATCTGAGATGTAGCAGAGAAGGTCTCACCAGTGAGGCTGCTGAGGAGAGGTTGGCCATTTTTGGCCACAACAAGCTAGAAGAGAAGAAAGAGAGCAAATTTTTGAAGTTCCTGGGGTTTATGTGGAATCCTCTGTCTTGGGTTATGGAGGCAGCTGCTATAATGGCAATTGCGCTTGCAAATGGAGGGGGGAAAGCTCCTGACTGGCAAGACTTTGTGGGTATCATCACCTTGCTTCTCATCAATTCAACTATCAGTTTCATTGAGGAGAACAATGCTGGTAATGCTGCAGCAGCTCTCATGGCTCGGCTAGCTCCAAAAGCAAAGGTTCTTCGAGATGGTAGGTGGAATGAGCAAGATGCTGCGGTCCTGGTTCCTGGTGACATAGTCAGCATCAAACTTGGAGATATTATACCAGCAGATGCTCGTCTTCTTGAAGGGGACCCTTTGAAAATTGATCAGTCTGCACTCACAGGTGAATCCCTGCCAGTGACTAAGGGCCCTGGTGATGGTGTTTATTCTGGTTCTACCTGCAAACAAGGAGAGATTGAAGCTGTGGTCATTGCTACTGGTGTTCATACTTTCTTTGGGAAAGCTGCTCACCTTGTAGATACTACAAATCAAGTTGGTCACTTTCAAAAGGTCTTGACTGCAATTGGTAACTTCTGCATATGTTCAATTGCTCTGGGGATGATAATTGAGATTATCGTCATGTATCCCATCCAACATCGAGCCTATCGTCCTGGAATTGATAACCTTCTTGTACTTCTTATTGGAGGAATTCCCATTGCCATGCCCACAGTTTTGTCTGTGACCATGGCCATTGGTTCTCATAGGCTATCACAGCAGGGGGCTATCACAAAGAGGATGACAGCCATTGAAGAGATGGCAGGCATGGATGTGCTTTGCAGTGATAAGACTGGGACTCTAACCTTAAACAAGCTTACTGTTGACAAAAATCTTGTTGAGGTTTTTGCAAAAGGAGTGGATGCTGATACTGTTGTTTTGATGGCGGCTCGAGCTTCAAGACTTGAAAATCAAGATGCAATAGATACCGCCATTGTTGGGATGCTGGCTGATCCAAAGGAGGCACGTGCTGGTATACAAGAAGTACATTTTCTTCCTTTTAATCCTACTGATAAGCGGACAGCATTGACTTATATTGATCAAGATGGTAAAATGCACAGAGTGAGCAAAGGTGCACCAGAACAGATCCTAAATCTTGCACACAATAAGACAGACATTGAACGTAGAGTTCATGCAGTGATAGATAAGTTTGCAGAGCGTGGCTTACGATCTCTTGCTGTAGCCTACCAAGAAGTTCCAGATGGAAGGAAAGAGAGTGCTGGAGGCCCATGGCAATTTATTGGCCTTATGCCGCTCTTTGACCCACCTAGGCATGATAGTGCAGAAACAATAAGGAGGGCACTGAACCTTGGAGTAAATGTCAAAATGATTACAGGGGATCAGCTAGCTATAGGAAAGGAAACAGGCCGTCGCTTGGGAATGGGTACCAATATGTATCCTTCATCTGCTTTACTTGGGCAGGATAAGGATGAATCCATTGCTGCCTTACCCATTGATGAACTAATAGAAAAAGCTGATGGATTCGCTGGTGTATTTCCTGAACACAAGTATGAGATTGTGAAACGCTTGCAAGCTAGGAAACATATTTGTGGAATGACTGGTGATGGAGTGAATGATGCACCTGCCCTCAAGAAGGCAGACATTGGCATTGCTGTAGCTGATGCTACTGATGCAGCTCGTAGTGCATCTGATATTGTTTTAACAGAACCTGGCCTTAGTGTTATTATAAGTGCTGTTTTGACCAGCCGAGCAATCTTCCAGAGAATGAAAAATTATACAATTTATGCAGTCTCAATTACAATTCGTATTGTGGTAAGTTAA 1992 0.4403 MGEKPEVLEAVLKETVDLENIPIEEVFENLRCSREGLTSEAAEERLAIFGHNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKAPDWQDFVGIITLLLINSTISFIEENNAGNAAAALMARLAPKAKVLRDGRWNEQDAAVLVPGDIVSIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIALGMIIEIIVMYPIQHRAYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFAKGVDADTVVLMAARASRLENQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYIDQDGKMHRVSKGAPEQILNLAHNKTDIERRVHAVIDKFAERGLRSLAVAYQEVPDGRKESAGGPWQFIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESIAALPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVVS. 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01446 663 Gene3D - 196 335 - -
Seca12g01446 663 Gene3D - 68 145 - -
Seca12g01446 663 CDD P-type_ATPase_H 36 662 IPR006534 GO:0008553|GO:0016020|GO:0120029
Seca12g01446 663 PRINTS H+-transporting ATPase (proton pump) signature 621 646 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g01446 663 PRINTS H+-transporting ATPase (proton pump) signature 447 465 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g01446 663 PRINTS H+-transporting ATPase (proton pump) signature 562 578 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g01446 663 PRINTS H+-transporting ATPase (proton pump) signature 590 606 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g01446 663 NCBIfam HAD-IC family P-type ATPase 103 351 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g01446 663 NCBIfam HAD-IC family P-type ATPase 565 662 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g01446 663 NCBIfam plasma-membrane proton-efflux P-type ATPase 36 662 IPR006534 GO:0008553|GO:0016020|GO:0120029
Seca12g01446 663 SFLD p-type atpase 313 642 IPR044492 -
Seca12g01446 663 Pfam E1-E2 ATPase 132 310 - -
Seca12g01446 663 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Seca12g01446 663 FunFam Plasma membrane ATPase 484 638 - -
Seca12g01446 663 SUPERFAMILY Calcium ATPase, transduction domain A 134 231 IPR008250 -
Seca12g01446 663 SUPERFAMILY HAD-like 327 637 IPR036412 -
Seca12g01446 663 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 662 IPR023298 -
Seca12g01446 663 Gene3D - 487 627 IPR023214 -
Seca12g01446 663 PRINTS P-type cation-transporting ATPase superfamily signature 507 517 - -
Seca12g01446 663 PRINTS P-type cation-transporting ATPase superfamily signature 181 195 - -
Seca12g01446 663 PRINTS P-type cation-transporting ATPase superfamily signature 485 496 - -
Seca12g01446 663 PRINTS P-type cation-transporting ATPase superfamily signature 590 609 - -
Seca12g01446 663 PRINTS P-type cation-transporting ATPase superfamily signature 331 345 - -
Seca12g01446 663 PRINTS P-type cation-transporting ATPase superfamily signature 613 625 - -
Seca12g01446 663 ProSitePatterns E1-E2 ATPases phosphorylation site. 333 339 IPR018303 -
Seca12g01446 663 PANTHER CALCIUM-TRANSPORTING ATPASE 19 661 - -
Seca12g01446 663 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Seca12g01446 663 FunFam Plasma membrane ATPase 134 218 - -
Seca12g01446 663 Pfam haloacid dehalogenase-like hydrolase 327 604 - -
Seca12g01446 663 SFLD C1.7: P-type atpase like 313 642 - -
Seca12g01446 663 Gene3D - 343 486 IPR023299 GO:0000166
Seca12g01446 663 FunFam Plasma membrane ATPase 343 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01446 Seca-Chr12 14544626 14549346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01446 1 662 Primary Pumps ATPases AT5G62670 94.562 0.0 1245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01446 K01535 - cpap:110819640 1212.59