Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01438 ATGAAAGAGAAAAAGGACTTCAAGTTTGAAACAAATGTACAGCCTCTTCGGCTTGCTAAATGGAATGAGAATGATATAATAACTTTTTCTATGAGAAACAGAAAATATACATATCATGAATTTGAGGCTCTGGCAAACAAGACCTTTTTCAGAAGATTTTGCAGTTCTGAAGGTCTTTCTTCTTCATATGTGGAAAAGGAGTTCTGGTATGAGATGGCACATGGAGAGAAGGGACCAGTTGAGTATGGAGTCAATGTTGAGGGTACTGCCTTTTCATGTGATCCTAATGACAAGCTTGGAACAAGCAAATGGAATTTGAAGAATTTCTCACGGCTTCTGCAGTCCCCTTTGCGTTTAGTTGACAGGGAAATTCCAGGGGTAACTGATCCTATGCTTTACATTGGGATGCTGTTCAGTATGTTTGCATGGCATGTAGAAGATCACTATTTGTATAGCATAAATTATCATCACACTGGTGCTAATAAAACTTGGTATGGCGTGCCTGGCTATGCAGCCTCTCAATTTGAAAAGACTGTCTTAAATCATGTGTATTGTAATAAGATTTTAACAAAACATGGAGAGGATGGAGCTTTCAAATATCTTGCATATAAAACAACCATGTTCCCTCCAAGTGTTTTGTTACAACATGATGTGGCAGTTTACAAGGCTGTGCAGAAGCCAGGAGAGTTTGTGATCACCTTTCCTAGAGCATATCATGCTGGATTTAGTCATGGTTTTAACTGTGGAGAAGCAGTAAACTTTGCTATTGGAGATTGGTTTCCACTTGGGGCTGCTGCTACCAAACGATATGCACATCTCAGAATCCTACCTATAATTCCATATGAGGAACTTCTTTGTAAAGGGGCAATGCTGGTTTACAAGTCCTCAAAAGTCAAAAGTTCCAAGAACAAACCAGAAGACACATCATCTTATTGTGCTATTTTATTGTCTTTCTTGCATCTTATGCAATTTTATAAGACATCCCTTTTGCGGCTGAACAGTTCAAGAAAGTTATCAAGCTCTTCAAATACATTAGGTTCTCAGATATGCAGCCTCTGCCATAGGGATTGTTATGTGGCTTACTTGCTGTGCAAGTACTGCTATTCTCATCCAATTTGTCTTTTCCATGATATTGCTCCACAGACTTGTTTATGTGGTAGAAAATATACTATTTTCCAGAGGAATGACTTGCTGGATCTGGAAGATGCTGCCAAACGTTTTCAACAGGAAAACAAATGCCTTGATACGTTATCTCTATCAAATATATTCTCCTATAACAGAAATGAATGCATCAAAGATCTCAAGCAGAATAATCCTTGGCATGAAGAAAGAAGTCCCAGAAGAAGTGCTAATTCTGTAGGGGCAGCATCAAAACTGAAAAGAAGGGTAGCAGACAACATCAAGCACAATGTTGAAAAGAATAAAAAGACAACAATGAAGCATTATAGAAACAATGGGCCTCCATCAGTAATAAGTACCAAAAGACCACGAATTATTTATAACTTGAGAAAAAGGGAATCAAAATTGATCAAACGTGTTCCTTCCCTTTTTGCAACATATGAAAAATTAAAATAA 1575 0.3765 MKEKKDFKFETNVQPLRLAKWNENDIITFSMRNRKYTYHEFEALANKTFFRRFCSSEGLSSSYVEKEFWYEMAHGEKGPVEYGVNVEGTAFSCDPNDKLGTSKWNLKNFSRLLQSPLRLVDREIPGVTDPMLYIGMLFSMFAWHVEDHYLYSINYHHTGANKTWYGVPGYAASQFEKTVLNHVYCNKILTKHGEDGAFKYLAYKTTMFPPSVLLQHDVAVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAAATKRYAHLRILPIIPYEELLCKGAMLVYKSSKVKSSKNKPEDTSSYCAILLSFLHLMQFYKTSLLRLNSSRKLSSSSNTLGSQICSLCHRDCYVAYLLCKYCYSHPICLFHDIAPQTCLCGRKYTIFQRNDLLDLEDAAKRFQQENKCLDTLSLSNIFSYNRNECIKDLKQNNPWHEERSPRRSANSVGAASKLKRRVADNIKHNVEKNKKTTMKHYRNNGPPSVISTKRPRIIYNLRKRESKLIKRVPSLFATYEKLK. 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01438 524 Gene3D Cupin 1 314 - -
Seca12g01438 524 PANTHER LYSINE-SPECIFIC DEMETHYLASE 7 479 - -
Seca12g01438 524 SMART cupin_9 98 271 IPR003347 -
Seca12g01438 524 ProSiteProfiles JmjC domain profile. 98 271 IPR003347 -
Seca12g01438 524 Pfam JmjC domain, hydroxylase 131 254 IPR003347 -
Seca12g01438 524 SUPERFAMILY Clavaminate synthase-like 100 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01438 Seca-Chr12 14421168 14426005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01438 86 285 C2H2 Transcription Factor Family AT5G04240 46.500 2.62e-52 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca12g01438 JmjC 2.4e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01438 - - gmx:100809650 793.112