Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01436 ATGTGTCACGCAACGACATCGTTTAGAGGCCCAGCTTCTTCCTCAATCCGAAAGGCGGTTAGGGTTTTTCAGAGTTTTGCAGGAGGCTTCTTCGTGTCATTGTGGCAGTTACGCTTGGGAATCGAATTCGAATTGGAAGAGATGATGGAGGAGGAGGAAAGTTGCGAGAGAGATAGGCACAAAATCCGTAACATATGCATCTTGGCGCACGTGGACCACGGCAAGACCACGCTCGCCGATCAGCTCATCGCGGCGGCAGGCGGCGGGGTCGTCCACCCGAAAGTGGCGGGTCGGGTTCGGTTCATGGACTATCTCGACGAAGAGCAGCGCCGAGCAATCACGATGAAGAGCTCCTCCATCGCCCTCCGCTACAAGGACCACACCGTAAACCTCATCGACTCCCCCGGCCACATTGACTTCTGCGGCGAGGTCTCCACCGCCGCACGCCTCTCCGACGGCGCGCTCCTCCTCGTTGACGCTGTCGAGGGCGTCCACATCCAGACCCACGCCGTCCTCCGCCAGTGCTGGATCGAACGCCTCTCCCCTTGCCTTGTCCTCAACAAGCTCGATCGCTTGATCACCGAGTTGAAACTCACTCCCTCCGAAGCCTACACTCGCCTCTTGCGAATCGTTCACGAGGTTAACGGCATCGTCAGCGCTTACAAGTCGCAGAAATACCTCACCGACGTCGATTCCCTCCTCGCCGGTGGTACCACATCCGGTGAGCTTCTGGAAGATTACGATGACAACGAGGATGTGTTTCAACCGCAGAAAGGGAATGTCGTATTCGCATGCGCGTTGGATGGTTGGGGTTTTGGGATTCATGAGTTCGCAGAGATATATGCTTCCAAGCTTGGAGCTAGTGTGAATGCGTTGCAGAAAGCCCTGTGGGGTCCACGGTATTTCAACCCTAAGACCAAGATGATTGTTGGGAAGAAAGGGATTGGTGGTGGTAAGGCTAAGCCTATGTTTGTTCAGTTTGTGTTGGAGCCTTTGTGGCAGGTGTATCAGGGGGCTTTAGAAGGGGATAGAGGGTTGCTTGATAAGGTTATTAGGTCCTTTAATTTGCAGGTTCCAGCGAGGGAGTTGCAGAATAAGGATGCTAAGGTGGTGCTTCAAGCGGTTATGAGTCGTTGGCTTCCTGTTTCGGATGCCATTTTGTCCATGGCTGTTAAGTGTTTGCCGGACCCTGTCACAGCACAGGCATTTCGGATCTCACGGTTGATTCCCGTACATGAGGTTTCCGGGGATGGTGTTGATCGGAGCGTGGTGGAGGAGGCGGAGCTCACGAGGAAAGCGGTGGAGGGGTGTGATTGGAGGCCGGAGATTCCTTGTGTTGCCTTTGTGGCCAAGATGTTTGCTGTCCCGATCAGAATGCTTCCTCCCCAAGTGGGGCAGATTGTGGGCAGTTCTGGTGATGATGGAGAGGGTGAGTCAGATGAGTGTTTTCTGGCATTTGCTAGGATCTTTAGTGGGGTTTTGTCGGTGGGGCAGAGAGTTTTTGTGCTTTCTGCTTTGTATGATCCCCTAAAAGGGGAATCAATGCAAAAGCATATACAGGAGGCTGAATTGAAATCCTTGTATCTGATGATGGGCCAGGGGTTGAAAGTAGTGAAATCTGCCAAGGCAGGGGATGTTGTTGCTATCCGAGGCCTTGGCCAGCATATATTGAAAAGTGCTACCCTTTCTTCTACTAGGAACTGTTGGCCTTTTTCAAGTATGGCATTCCAAGTTTCCCCGACTTTGAGAGTCGCAATTGAGCCATCTGACCCTGCAGAGACGGGTGCGCTGCTCAAAGGCTTGAGGCTTCTGAATCGTGCGGATCCGTTTGTAGAGGTCACGGTTTCTGCAAGAGGAGAGCATGTTCTTGCTGCTGCTGGTGAAGTTCATCTTGAGAGATGTATAAAGGACTTGAAGGAGAGGTTTGCAAAAGTTAGCTTGGAAGTCTCTCCACCCCTTGTGTCCTACAAAGAGACCATTGAGGGAGAGGTCTCCAATGTGCTGGAAAATTTGAAAGTTCTTAGTAGGAGCTCAGATTATGTTGAGAAAACAACACCCAATGGAAGATGTGTTGTTCGCGTGCAGGTGATGAAACTTCTACCTTCTCTTACAAAGGTGCTTGATGAAAGCTCTGATTTACTTGGAGATATCATTGGAGTAAAGTCGGGGCAGACTGTTAAAAATCTAGAAACCCAAAGACCTAGTATTCTCGATAACAATAATCCAGCTGAAGTGCTAAGAAAACGCATAATGGATGTAGTGGAGAGTGATATTTTGAGCAGGAATGAAAATGACAAGGACCACGCCGAGAAATGTAAATTGAAGTGGCTGAAGCTTTTGAGGAGGATATGGGCACTTGGACCAAGGCAGATTGGTGCCAACATTATCTTCACCCCTGATATTAAAGCAGAAAGCACTAATACCTCTGTTCTAATACGTGGATGTTCTCATGTATCTGAAAAGTTGGGCTTCGAGGCTGATTCTAGTAACAGTAACTCAGTTTCTGAGACATCTTCAAATGAGAGCCAAGCCTTGTACATGGATGCTGAGCGTCTTGAGAGTAGTGTTATAACTGGGTTCCAGTTAGCCACTTCAGCTGGACCCTTATGTGATGAGCCTATGTGGGGTTTGGCATTTGTCATTGAGGCACGCGTATCTCCATTTACAGGGCTGTATGATGAATCTGAAGCACACCAACAATCTGAGCAGTATGGAATCTTTGCAGGGCAGGTAATTGCAACTGTCAAAGATGCTTGTAGAGCAGCTGTGCTTCAGAATAAGCCACGGCTAGTGGAAGCAATGTACTTTTGTGAACTGAATACCCCAACTGAATATTTGGGTCCCATGTATGCTGTACTTTCCCGAAGACGGGCCCGAGTCTTGAAGGAAGAGATGCAGGAAGGTTCCCCTTTCTTCACTGTGCATGCATATGTTCCTGTTTCTGAGAGCTTTGGTTTTGCGGATGAGCTTAGAAGGTGGACCTCTGGTGCTGCAAGTGCACTTCTTGTCCTTAGCCACTGGGAAGCACTACCTGAGGATCCTTTCTTTGTACCAAAAACAGAAGAGGAAATTGAAGAGTTTGGAGATGGTTCTAGTGTTCTTCCAAATACAGCAAGAAAGTTAATTGATGCAGTCAGACGGCGCAAGGGCCTTCCTGTGGAGGAAAAGGTAGTACAGCATGGAACCAAGCAGAGGACACTGGCTCGGAAAGTCTGA 3216 0.4944 MCHATTSFRGPASSSIRKAVRVFQSFAGGFFVSLWQLRLGIEFELEEMMEEEESCERDRHKIRNICILAHVDHGKTTLADQLIAAAGGGVVHPKVAGRVRFMDYLDEEQRRAITMKSSSIALRYKDHTVNLIDSPGHIDFCGEVSTAARLSDGALLLVDAVEGVHIQTHAVLRQCWIERLSPCLVLNKLDRLITELKLTPSEAYTRLLRIVHEVNGIVSAYKSQKYLTDVDSLLAGGTTSGELLEDYDDNEDVFQPQKGNVVFACALDGWGFGIHEFAEIYASKLGASVNALQKALWGPRYFNPKTKMIVGKKGIGGGKAKPMFVQFVLEPLWQVYQGALEGDRGLLDKVIRSFNLQVPARELQNKDAKVVLQAVMSRWLPVSDAILSMAVKCLPDPVTAQAFRISRLIPVHEVSGDGVDRSVVEEAELTRKAVEGCDWRPEIPCVAFVAKMFAVPIRMLPPQVGQIVGSSGDDGEGESDECFLAFARIFSGVLSVGQRVFVLSALYDPLKGESMQKHIQEAELKSLYLMMGQGLKVVKSAKAGDVVAIRGLGQHILKSATLSSTRNCWPFSSMAFQVSPTLRVAIEPSDPAETGALLKGLRLLNRADPFVEVTVSARGEHVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGEVSNVLENLKVLSRSSDYVEKTTPNGRCVVRVQVMKLLPSLTKVLDESSDLLGDIIGVKSGQTVKNLETQRPSILDNNNPAEVLRKRIMDVVESDILSRNENDKDHAEKCKLKWLKLLRRIWALGPRQIGANIIFTPDIKAESTNTSVLIRGCSHVSEKLGFEADSSNSNSVSETSSNESQALYMDAERLESSVITGFQLATSAGPLCDEPMWGLAFVIEARVSPFTGLYDESEAHQQSEQYGIFAGQVIATVKDACRAAVLQNKPRLVEAMYFCELNTPTEYLGPMYAVLSRRRARVLKEEMQEGSPFFTVHAYVPVSESFGFADELRRWTSGAASALLVLSHWEALPEDPFFVPKTEEEIEEFGDGSSVLPNTARKLIDAVRRRKGLPVEEKVVQHGTKQRTLARKV. 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01436 1071 CDD EF2_II 444 565 - -
Seca12g01436 1071 FunFam Elongation factor like GTPase 1 928 1063 - -
Seca12g01436 1071 Pfam Elongation factor Tu domain 2 484 562 IPR004161 GO:0005525
Seca12g01436 1071 SUPERFAMILY EF-G C-terminal domain-like 577 652 IPR035647 -
Seca12g01436 1071 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 395 IPR027417 -
Seca12g01436 1071 SUPERFAMILY EF-G C-terminal domain-like 932 1030 IPR035647 -
Seca12g01436 1071 PRINTS GTP-binding elongation factor signature 110 118 IPR000795 GO:0003924|GO:0005525
Seca12g01436 1071 PRINTS GTP-binding elongation factor signature 182 191 IPR000795 GO:0003924|GO:0005525
Seca12g01436 1071 PRINTS GTP-binding elongation factor signature 64 77 IPR000795 GO:0003924|GO:0005525
Seca12g01436 1071 PRINTS GTP-binding elongation factor signature 146 157 IPR000795 GO:0003924|GO:0005525
Seca12g01436 1071 PRINTS GTP-binding elongation factor signature 130 140 IPR000795 GO:0003924|GO:0005525
Seca12g01436 1071 CDD eEF2_snRNP_like_C 932 1011 - -
Seca12g01436 1071 FunFam Translation elongation factor 2 579 655 - -
Seca12g01436 1071 FunFam Elongation factor like GTPase 1 274 380 - -
Seca12g01436 1071 CDD EF2_snRNP_III 580 651 - -
Seca12g01436 1071 Gene3D - 675 926 IPR014721 -
Seca12g01436 1071 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 60 289 IPR000795 GO:0003924|GO:0005525
Seca12g01436 1071 SUPERFAMILY Ribosomal protein S5 domain 2-like 654 931 IPR020568 -
Seca12g01436 1071 Pfam Elongation factor Tu GTP binding domain 61 291 IPR000795 GO:0003924|GO:0005525
Seca12g01436 1071 SMART EFG_C_a 929 1018 IPR000640 -
Seca12g01436 1071 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 56 1070 - -
Seca12g01436 1071 Gene3D Translation factors 397 577 - -
Seca12g01436 1071 Gene3D Yeast translation eEF2 (G' domain) 274 380 - -
Seca12g01436 1071 Gene3D - 928 1062 - -
Seca12g01436 1071 FunFam Elongation factor 2-like protein 53 262 - -
Seca12g01436 1071 Gene3D Elongation Factor G (Translational Gtpase), domain 3 579 655 - -
Seca12g01436 1071 CDD aeEF2_snRNP_like_IV 651 936 - -
Seca12g01436 1071 Gene3D - 53 255 IPR027417 -
Seca12g01436 1071 CDD EF2 63 282 - -
Seca12g01436 1071 Pfam Elongation factor G C-terminus 930 1014 IPR000640 -
Seca12g01436 1071 SUPERFAMILY Translation proteins 436 574 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01436 Seca-Chr12 14414346 14420117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01436 56 1071 Eukaryotic Initiation Factors Gene Family AT3G22980 71.040 0.0 1471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01436 K14536 - pvu:PHAVU_003G003900g 1724.91