Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01434 ATGGAAATGGGTACTGTGACGTGGGTTTTCTTGGTGATTTTGACAACATTTTTCTGCCCTTTCTCTCTTGCTCTCTCCCAAGACGGTCTGACATTGTTGGAAATCAAAAGCGCTTTGAATGACACTAAGAATGTTCTCAGCAACTGGCAAGAGTTTGATGACTCTCCTTGTACATGGACTGGTATCACTTGTCATCCTGAGGAACAAAGAGTTCGCACAATAAATTTGCCATATATGCAACTTGGAGGAATTATATCTCCCAGCATTGGTAAACTCAGTAGACTACAGAGACTGGCGCTTCATCAGAATGGCTTGCATGGAATTATTCCTAATGAAATTACCAATTGTACTGAGCTAAGAGCCCTGTACTTGAGGGCTAATTATTTCCAAGGAGGCATACCGGCAGCTATTGGAAACCTTTCATATTTAAATATACTCAAGTTTAAATACAGGGATTTATCAAGCAACTCATTAAAAGGTGCTATACCTTCCTCACTTGGTCGTCTCTCACATTTGCAAATTCTGAACTTGTCTACCAATTTCTTTTCTGGTGAAATCCCTGACATTGGAGTACTAAGAACCTTCCAAAAGAACTCGTTTATTGGCAATTTAGATCTTTGTGGGCGGCAAGTCCAAAAGCCATGTAGGACATCACTTGGTTTCCCTGTGGTGATACCACATGCTGAAAGTGATGAAGCTGCAGTCCCTACCAAAAGATCTTCACATTACATAAAATGGGTGTTAATTGGTGCAATGGCAACTATGGGCCTTGCACTTGTCATAATCCTTTCATTCCTCTGGATTCGTTTGTTATCAAAGAAGGAAAGAGTTGCTAGGAGATACACTGAAGTCAAGAAACAAGTTGATTCAGAAGCAAATCTTTTATCAGGCACAAAACTCATTACATTCCATGGTGATCTGCCATACACATCATCTGAGATCATAGAAAAGCTGGAGTCTCTTGATGAAGAGGATGTTGTAGGGTCAGGAGGATTTGGTACTGTTTACCGAATGGTGATGAATGATTGTGGTACTTTTGCTGTTAAGAGGATTGACAGAAGCCGTGAAGGGTCTGATCAAGTGTTTGAGAGGGAACTAGAGATCTTGGGGAGCATCAAGCACATAAATTTAGTGAACCTACGTGGTTACTGCAGGCTCCCTTCTTCAAGGCTCCTTATCTATGACTATTTGGCTATAGGCAGCTTAGAGGATCTCTTGCATGAAAATACTGAACAATTACCGAATTGGAATGATCGCCTAAAGATAGCCCTTGGTTCTGCTCGGGGTTTGGCATACTTGCACCATGAATGCTGCCCAAAAATTGTTCACCGTGACATAAAATCCAGCAACATCCTTCTTGATGAAAACATGGAGCCCCATATCTCTGATTTTGGTCTTGCAAAGCTTTTGGTTGATGAAGATGCCCATGTTACTACAGTGGTTGCTGGCACATTTGGCTATTTGGCACCAGAGTATCTACAAAGTGGGAGAGCTACTGAGAAGTCAGATGTATATAGCTTTGGAGTCCTATTGCTGGAACTTGTAACTGGAAAGAGGCCTACAGATCCTTCCTTTGTGAAGAGAGGCTTAAATGTTGTTGGTTGGATGAACACATTACTGAGAGAAAACAGATTGGAAGATGTGGTAGACAAAAGATGCACTGATGCAGATGCAGGAACACTTGAAGTAATTCTTGAACTAGCAGCTAGATGCACTGATGCAAATGCAGATGAACGTCCATCAATGAACCAAGTATTACAGTTGCTGGAACAAGAGGTTATGTCTCCTTGCCCAAGTGATTTTTATGAGTCTCAATCAGATCACTGTTGA 1830 0.4142 MEMGTVTWVFLVILTTFFCPFSLALSQDGLTLLEIKSALNDTKNVLSNWQEFDDSPCTWTGITCHPEEQRVRTINLPYMQLGGIISPSIGKLSRLQRLALHQNGLHGIIPNEITNCTELRALYLRANYFQGGIPAAIGNLSYLNILKFKYRDLSSNSLKGAIPSSLGRLSHLQILNLSTNFFSGEIPDIGVLRTFQKNSFIGNLDLCGRQVQKPCRTSLGFPVVIPHAESDEAAVPTKRSSHYIKWVLIGAMATMGLALVIILSFLWIRLLSKKERVARRYTEVKKQVDSEANLLSGTKLITFHGDLPYTSSEIIEKLESLDEEDVVGSGGFGTVYRMVMNDCGTFAVKRIDRSREGSDQVFERELEILGSIKHINLVNLRGYCRLPSSRLLIYDYLAIGSLEDLLHENTEQLPNWNDRLKIALGSARGLAYLHHECCPKIVHRDIKSSNILLDENMEPHISDFGLAKLLVDEDAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFVKRGLNVVGWMNTLLRENRLEDVVDKRCTDADAGTLEVILELAARCTDANADERPSMNQVLQLLEQEVMSPCPSDFYESQSDHC. 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01434 609 Gene3D Ribonuclease Inhibitor 25 217 IPR032675 -
Seca12g01434 609 Gene3D Transferase(Phosphotransferase) domain 1 398 599 - -
Seca12g01434 609 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 72 591 - -
Seca12g01434 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Seca12g01434 609 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Seca12g01434 609 ProSitePatterns Protein kinases ATP-binding region signature. 327 349 IPR017441 GO:0005524
Seca12g01434 609 Pfam Protein kinase domain 323 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01434 609 ProSiteProfiles Protein kinase domain profile. 321 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01434 609 Gene3D Phosphorylase Kinase; domain 1 281 396 - -
Seca12g01434 609 SUPERFAMILY L domain-like 26 211 - -
Seca12g01434 609 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 192 - -
Seca12g01434 609 SUPERFAMILY Protein kinase-like (PK-like) 306 590 IPR011009 -
Seca12g01434 609 SMART serkin_6 321 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01434 609 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 397 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01434 Seca-Chr12 14401746 14405602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01434 7 598 Receptor kinase-like Gene Family AT2G35620 49.155 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Seca12g01434 Pkinase 1.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01434 - - gmx:100797653 1072.38