Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01432 ATGGCGGGTGGGAGGGTCTTTAGTAGTGGTGGTGGTGGTCCTGCAAATGTTTCAAATATGACTATTTTGCTTCACAATCAAACTCCTCGTGCCACTTCTCAACCTCTTGATTCTCTTTTCCTTTCTACATCCACTCCTTTCCTTGGTTCAAGATCTATGGTGAGCTTTGAAGATGTTCAAAGAGGGAAGGGGCATAATGGGTCGTTTTTCCGTGCATTTGATCTTGATGAGAATTATGATGATGGCATGGATGAGTACTTTCATCACACAGAGAAGAAGCGGCGTCTCTCTGTGGATCAAGTTCAGCTTCTTGAGAAAAGCTTTGAGGAAGAGAACAAGCTTGAACCTGAGAGGAAAACCAAGATAGCAAAGGATCTTGGTTTGCAACCACGGCAAGTTGCAATTTGGTTTCAGAACCGCAGAGCAAGGTGGAAGACCAAACAGCTTGAGAAAGATTATGAATCTCTTCATGCTAGCTATGAGAATCTCAAGTCCAACTATGACAACCTCCTCAAGGAGAAAGAAAATTTAAAAGCTGAGGTGGCAAGTCTAACTGAAAAGGTGCTTGCAAGAGAGAAACAAGGGGGAAACTTTAAACAACAGGGTGAAGGTGAAAGTGAAACAAAGGGGTTAATGTTATTGCAGGAACCACCCCAAAAGCCTTTACTTGAATCAGTTTCTGAGGGTGAAGGATCCAAGGTCTCTGTTGGAGTTTGTAATAATAATAACAAACAAGAAGATATTAGTTCAGCAAGGAGTGACATTTTGGATTCTGATAGTCCACTTTACAATGATGGAGTTCACTCTACACTACTAGAGACAGGTGATTCTTCTTATGTATTTGAACCTGATCAATCAGACTTATCACAAGATGAAGAAGACAACCTCAGCAGGAGCTTTTTGCCTCCATACATATTTCCAAAACTTGAAGATATGGATTACTCCAACCCGCCTGAAAGTTCATGTAATTTTGGATTCCCAGAGGAAGATCATGCTCTTTGGTCCTGGTCTTACTAG 1017 0.4149 MAGGRVFSSGGGGPANVSNMTILLHNQTPRATSQPLDSLFLSTSTPFLGSRSMVSFEDVQRGKGHNGSFFRAFDLDENYDDGMDEYFHHTEKKRRLSVDQVQLLEKSFEEENKLEPERKTKIAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYESLHASYENLKSNYDNLLKEKENLKAEVASLTEKVLAREKQGGNFKQQGEGESETKGLMLLQEPPQKPLLESVSEGEGSKVSVGVCNNNNKQEDISSARSDILDSDSPLYNDGVHSTLLETGDSSYVFEPDQSDLSQDEEDNLSRSFLPPYIFPKLEDMDYSNPPESSCNFGFPEEDHALWSWSY. 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01432 338 Gene3D - 95 141 - -
Seca12g01432 338 MobiDBLite consensus disorder prediction 234 260 - -
Seca12g01432 338 Gene3D - 142 191 - -
Seca12g01432 338 CDD homeodomain 92 148 IPR001356 GO:0003677
Seca12g01432 338 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 78 242 IPR045224 GO:0003700
Seca12g01432 338 Coils Coil 146 194 - -
Seca12g01432 338 ProSitePatterns 'Homeobox' domain signature. 122 145 IPR017970 GO:0000981|GO:0006355
Seca12g01432 338 FunFam Homeobox-leucine zipper protein HAT5 85 149 - -
Seca12g01432 338 ProSiteProfiles 'Homeobox' domain profile. 87 147 IPR001356 GO:0003677
Seca12g01432 338 SUPERFAMILY Homeodomain-like 78 149 IPR009057 -
Seca12g01432 338 MobiDBLite consensus disorder prediction 274 296 - -
Seca12g01432 338 Pfam Homeobox associated leucine zipper 147 188 IPR003106 GO:0006355|GO:0043565
Seca12g01432 338 PRINTS Lambda-repressor HTH signature 118 127 IPR000047 GO:0003677
Seca12g01432 338 PRINTS Lambda-repressor HTH signature 127 143 IPR000047 GO:0003677
Seca12g01432 338 SMART HOX_1 90 151 IPR001356 GO:0003677
Seca12g01432 338 Pfam Homeodomain 92 145 IPR001356 GO:0003677
Seca12g01432 338 MobiDBLite consensus disorder prediction 193 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01432 Seca-Chr12 14376039 14381907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01432 39 195 Homeobox Transcription Factor Family AT3G01470 50.000 7.42e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca12g01432 Homeodomain 1.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01432 - - gmx:100799054 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01432 12 14376039 14381907 Seca12g01432 12 14376039 14381907 ECH