Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01424 ATGGAAGCTAACAAACTTAGATTGCTCTTCTTTTGTGTACTTTTTCTTGCTATATTCCCTACCCTCAGGGCTAATATCGCTCAATTTGACCAAGTATGGCTGAAGCGATCTCAGGAAGCCAAAAAAGCAGCACAACAGGCTTTCAAGTCAAACCCTGAAGAAGTAGCTGATGATTTCAATAAGCACGTCAACAAGGCTGTGAATGGCTTCAATAGCACGAGGAGGGCTTTAGCCAAATACAATGGTCCATGCAATGCCACAAATCCCATTGACAGTTGCTGGAGATGTGATGAAAACTGGGAAAAGAACCGCAAAAAGTTAGCAGATTGTGTTATTGGTTTTGGTCATGGCACAACAGGAGGCAAAGATGGCGAAATTTATGTTGTGGATGATCCATCTGATGATGACCTTGTCAGCCCAAAACCAGGGACTTTGAGACATGCTGTCATTCAAAAGGAGCCACTTTGGATCATTTTTAAGAAAAATATGTCCATCAAACTCAGAGCAGAGCTTCTACTAACTGATAATAAGACTATAGATGGACGTGGTGCAAACGTTCATATTAGTGATGGTGCTCAAATTACATTGCAATATGTGCAAAACATTATCATTCACGGACTGCACATCCATGATATCAAAAGAGCTAGTGGTGGCCTCATCAGAGACTCCATGAATCACTATGGATACCGTTCAACGAGTGATGGTGATGCAATTTCAATGTTTGGAGCTACTAATGTTTGGATAGATCATATTTCTATGTCCAATTGTGATGATGGCCTTGTAGATGCTGTAGAGGGATCAACAGCCATTACCATCTCCAACTGCCATATGACACATCATAATGATGTTATGTTATTTGGTGCGAGTGATACCTACTCAGGAGATAAACTCATGCAAATAACTCTGGCTTTCAACCATTTTGGACAAGGATTGGTGCAGAGGATGCCAAGGTGCAGATGGGGTTTTGTTCATGTTGTCAACAATGACTACACTCACTGGCTTATGTATGCCATTGGTGGGAGTTCACATCCCACCATCATCAGCCAGGGAAACCGATTTATTGCTCCAGAAAACCGAAATGCAAAAGAGGTGACAAAAAGGGATTATGCACCTGAAAGCGAGTGGAAGAAATGGGATTGGAGATCAGAAGATGACTTAATGATGAATGGAGCCTTCTTTGTTGAGTCTGGAAATAAGGTCACAAATGGTCCCAAGACAGGCATCACTGCAAAGCCTGGTTCATTTGCTGCAAGCCTCACTCGCTTTGCAGGTGCTCTAAAATGTGAACCAAACAAGGAATGCTGA 1305 0.4215 MEANKLRLLFFCVLFLAIFPTLRANIAQFDQVWLKRSQEAKKAAQQAFKSNPEEVADDFNKHVNKAVNGFNSTRRALAKYNGPCNATNPIDSCWRCDENWEKNRKKLADCVIGFGHGTTGGKDGEIYVVDDPSDDDLVSPKPGTLRHAVIQKEPLWIIFKKNMSIKLRAELLLTDNKTIDGRGANVHISDGAQITLQYVQNIIIHGLHIHDIKRASGGLIRDSMNHYGYRSTSDGDAISMFGATNVWIDHISMSNCDDGLVDAVEGSTAITISNCHMTHHNDVMLFGASDTYSGDKLMQITLAFNHFGQGLVQRMPRCRWGFVHVVNNDYTHWLMYAIGGSSHPTIISQGNRFIAPENRNAKEVTKRDYAPESEWKKWDWRSEDDLMMNGAFFVESGNKVTNGPKTGITAKPGSFAASLTRFAGALKCEPNKEC. 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01424 434 Pfam Pectate lyase, N terminus 25 77 IPR007524 GO:0030570
Seca12g01424 434 PANTHER PECTATE LYASE 18-RELATED 40 432 IPR045032 GO:0030570
Seca12g01424 434 Pfam Pectate lyase 169 353 IPR002022 -
Seca12g01424 434 SMART amb_all 162 359 IPR002022 -
Seca12g01424 434 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Seca12g01424 434 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Seca12g01424 434 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
Seca12g01424 434 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
Seca12g01424 434 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
Seca12g01424 434 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
Seca12g01424 434 PRINTS Pollen allergen Amb family signature 378 402 IPR018082 -
Seca12g01424 434 SUPERFAMILY Pectin lyase-like 88 425 IPR011050 -
Seca12g01424 434 Gene3D - 87 427 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01424 Seca-Chr12 14273466 14276434 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01424 1 434 Polysaccharide Lyase AT3G01270 56.000 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01424 K01728 - gmx:100801864 680.633