Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01419 ATGTTCAAGCATTTTACATCAAAACATTACTTACTTGAATGGAACTCTGATCTTGTGATCAACACTTCTACTTTCACTCCTGGTTTCCACGTTATTTCCAGATTTTCCTTTTTCTTTGTTTATGTGACACGAAAGTTTCTAGAGAATTTTTGCGGAGATCAGGAATTTATAGAATCCATATCATTCCTTCAGTTTCTTCTTAGTCCTTACTTCATTTCAACAAATCCTCGGCAGGTTCGATTCCTGGCAAGGTCTTTTGCAGTACCTGGAAATCATCTTGGACAGCAAAGTCATGGCTTTCGTTGGCCATATGGTCAGGTGGCAATTATTACTCCTTTTAATTTTCCCTTAGAGATTCCAGTCCTTCAGTTGATGGGTGCACTTTATATGGGCAACAAGCCAGTCCTTAAAGTTGATAGCAAGGTGAGCATTATTATGGAGCAAATGTTGCGGCTTCTTCATACATGTGGTTTACCTGTAGAAGATGTAGACTTCATAAATTCTGATGGGAAGACAATGAACAAGCTGTTATTGGAGGTTGGTTGTTTTGTACCTTTTTTGTTTTTGCATTCAGATAATTCTACACATCATAATATTATTCCTGAAAGATTACCAATTTATTTTATGACTTCAATTCATGATGATCTCAATTTTCAACTTGGTTCAAGAGTGGCAGAGAAGTTGGCTGGTGATTTGAGGGGCCGCATTAAGTTGGAAGATGCAGGATTTGACTGGAAAATACTTGGCCCTGATGTTCATCAGGAGGATTACATTGCTTGGGTCTGTGACCAGGATGCATATGCATGCAGTGGTCAGAAGTGCTCAGCACAATCATTGTTATTTATGCATGAGAACTGGTCGAATACTTCCTTCATATCTAAGTTGAAAGATCTTGCTGAGAGAAGAAAGCTAGCGGACTTGACAATTGGTCCAGTCCTCACTTTTACAACTGATTCGTTGCTAGAACACACGAATAAGTTACTTGAGATACCTGGGGCAAAACTGCTCTTTGGAGGTCGGCCTCTGGAGGACCATTCAATTCCACCGATTTATGGTGCTATTAAACCGACTGCTGTTTATGTTCCTCTTGAGGAAATTATGAAGGAAAAGAATTATGAGCTTGTGACAAAAAAAATATTCGGACCTTTTCAGGAAGTCATTGGCAAATCAGTAAATGGAACTACTTATGCTGGTTTAAGAGCAAGGACAACAGGAGCTCCCCAGAATCACTGGTTTGGACCTGCTGGTGACCCTAGGGGTGCAGGAATTGGAACACCAGAAGCTATAAGACTTGTATGGTCATGCCATAGAGAAATTATCTATGATATTGGGCCCGTGCCACAACATTGGGAAATTCCTCCATCAACCTGA 1371 0.4012 MFKHFTSKHYLLEWNSDLVINTSTFTPGFHVISRFSFFFVYVTRKFLENFCGDQEFIESISFLQFLLSPYFISTNPRQVRFLARSFAVPGNHLGQQSHGFRWPYGQVAIITPFNFPLEIPVLQLMGALYMGNKPVLKVDSKVSIIMEQMLRLLHTCGLPVEDVDFINSDGKTMNKLLLEVGCFVPFLFLHSDNSTHHNIIPERLPIYFMTSIHDDLNFQLGSRVAEKLAGDLRGRIKLEDAGFDWKILGPDVHQEDYIAWVCDQDAYACSGQKCSAQSLLFMHENWSNTSFISKLKDLAERRKLADLTIGPVLTFTTDSLLEHTNKLLEIPGAKLLFGGRPLEDHSIPPIYGAIKPTAVYVPLEEIMKEKNYELVTKKIFGPFQEVIGKSVNGTTYAGLRARTTGAPQNHWFGPAGDPRGAGIGTPEAIRLVWSCHREIIYDIGPVPQHWEIPPST. 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01419 456 SUPERFAMILY ALDH-like 78 179 IPR016161 GO:0016491
Seca12g01419 456 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 220 241 IPR016162 GO:0016491
Seca12g01419 456 SUPERFAMILY ALDH-like 221 387 IPR016161 GO:0016491
Seca12g01419 456 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 40 197 IPR016162 GO:0016491
Seca12g01419 456 PANTHER ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE 384 456 IPR044638 GO:0004029
Seca12g01419 456 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 267 278 IPR016160 GO:0016491
Seca12g01419 456 Pfam Aldehyde dehydrogenase family 220 386 IPR015590 GO:0016491
Seca12g01419 456 Pfam Aldehyde dehydrogenase family 95 178 IPR015590 GO:0016491
Seca12g01419 456 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 242 387 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01419 Seca-Chr12 14231772 14236767 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01419 40 456 Aldehyde Dehydrogenase Gene Family AT5G62530 65.275 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01419 K00294 - gmx:100806579 634.795