Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01418 ATGAGGGACAACAAAGCTCTATGGGAATTATTGTCAAATATTTCAAATTGGGAGACTCGCCAGATGGTGTCTTGCAAACCTTTTAAACCTTGTTTCTTGGATGTGATTATATTGCAACAAGCACCACAATTTTACAGTGAAGAGGAAATGGCTCAAGTCAAGAATATGTGCAAATTGCATCTACAAGAAGAAAATGATGAGCAGAAAAATGATGATAAAAGTTTGAAGAAAAAAAGGCACGTTCAAATTGAAGACTTGCTTGAGGAGGAGGAAAGAGTCATACCGGTTAAAAAAAGATCAAGAAAGATTATTATACCACCATCACCACCCCCACCGTTATCACCACCACCGCCAGCACAATCATTGCTACCTGCACCTCCACCAGATTTGCCTACAACATTCAGAAGTTGGATTGAAGAGTTGAACGGTTCTGATGTAAATTTTCTCATGGACAAGAAACTTCACAACAGTGACGTGAGCACAAATAACAATCGTTTATCCATGCCACAAAATCAACTTAAGTCTGATTTCCTCACCGAAGCTGAGAAAGCAATGTTGGATGAAAAAGAAGGCATTGAAGTGATTGTCTTAGACCCACATCTTAGACAATTTTCTTTAATCTTGAAGAGGTGGAAGATGAAAAATGTGAACATCTACAATCTAATAAGGAATTGGAACAAAGTTGTGCATGAAAATAAATTTGAGAAAAACCATGAACTCCAAATATGGTCTTGTAGGGTCAATAGCAAATTGTACTTTCTGTTATATAAACATTAA 777 0.3681 MRDNKALWELLSNISNWETRQMVSCKPFKPCFLDVIILQQAPQFYSEEEMAQVKNMCKLHLQEENDEQKNDDKSLKKKRHVQIEDLLEEEERVIPVKKRSRKIIIPPSPPPPLSPPPPAQSLLPAPPPDLPTTFRSWIEELNGSDVNFLMDKKLHNSDVSTNNNRLSMPQNQLKSDFLTEAEKAMLDEKEGIEVIVLDPHLRQFSLILKRWKMKNVNIYNLIRNWNKVVHENKFEKNHELQIWSCRVNSKLYFLLYKH. 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01418 258 CDD B3_DNA 152 257 IPR003340 GO:0003677
Seca12g01418 258 SUPERFAMILY DNA-binding pseudobarrel domain 147 254 IPR015300 -
Seca12g01418 258 Gene3D - 139 257 IPR015300 -
Seca12g01418 258 MobiDBLite consensus disorder prediction 104 127 - -
Seca12g01418 258 Pfam B3 domain-containing protein At2g31720-like 137 230 IPR005508 GO:0003677
Seca12g01418 258 MobiDBLite consensus disorder prediction 100 127 - -
Seca12g01418 258 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 18 257 IPR005508 GO:0003677
Seca12g01418 258 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01418 Seca-Chr12 14229435 14230412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01418 134 255 B3 DNA Binding Superfamily AT1G05930 31.538 1.21e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01418 - - gmx:102663171 216.083