Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01415 ATGGTGGAGGCTGAACCAAGCACATCCTCTGCAGCAAAAAAGGAAGAGATTGATGATAAGCTTGATGCTACTAAAGCCGAAATGGGTGAGGTGAGAGAAGAAAATGAACGGTTAAAGATGTGCTTGGACAAAATAATGAATGAATATCGGACACTACAAATGCAATTTCACGATATGGTTAAGGAAGAAACAAAGAAGAATGATGATGCTAACCATGTCCATCAAGAGATAGAGGAATCGGATCTTGTTTCCCTGAGCCTTGGAAGAGTTCCAAGGAATGATGAGAAAGTAGTTAAAGTCTTTAAACCATTGAACGATGAAGAGTTTAACGAAGACTTGACTCTTGGATTGGAATGTAAGTTTGAAACATCAAAATCAGGGAGCACAACTGAAGCATTGCCAATAAATATTCCAAGCCCTGTGAATAGTTCTCATGAAGTGCCAAAGGAAGAGGCTGGGGATGAAACTAATTGGCCACCAACTAATAAGGCACTCAAGACAATGAGAGACACAGAGGATGAAGTTGCTCAGCAAACACCTGCTAAGAAAGCTAGAGTTTGTGTTAGAGCAAGATGTGATACCCCAACGATGAATGATGGATGCCAATGGAGGAAATATGGGCAAAAGATTGCAAAGGGAAATCCTTGCCCTCGAGCTTACTATCGCTGTACAATTGCACCATCATGCCCAGTAAGAAAACAGGTATAA 708 0.4096 MVEAEPSTSSAAKKEEIDDKLDATKAEMGEVREENERLKMCLDKIMNEYRTLQMQFHDMVKEETKKNDDANHVHQEIEESDLVSLSLGRVPRNDEKVVKVFKPLNDEEFNEDLTLGLECKFETSKSGSTTEALPINIPSPVNSSHEVPKEEAGDETNWPPTNKALKTMRDTEDEVAQQTPAKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAPSCPVRKQV. 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01415 235 MobiDBLite consensus disorder prediction 9 29 - -
Seca12g01415 235 MobiDBLite consensus disorder prediction 128 163 - -
Seca12g01415 235 SMART WRKY_cls 197 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g01415 235 MobiDBLite consensus disorder prediction 128 143 - -
Seca12g01415 235 Gene3D WRKY domain 184 235 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g01415 235 MobiDBLite consensus disorder prediction 1 29 - -
Seca12g01415 235 ProSiteProfiles WRKY domain profile. 192 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g01415 235 Coils Coil 14 34 - -
Seca12g01415 235 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 11 235 IPR044810 GO:0003700
Seca12g01415 235 Pfam WRKY DNA -binding domain 198 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g01415 235 SUPERFAMILY WRKY DNA-binding domain 190 235 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01415 Seca-Chr12 14183666 14188888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01415 28 235 WRKY Transcription Factor Family AT5G15130 40.928 4.00e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca12g01415 WRKY 2.3e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01415 - - lja:Lj0g3v0067609.1 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02720 10 34946415 34949877 Seca12g01415 12 14183666 14188888 ECH
Seca12g01415 12 14183666 14188888 Seca12g01415 12 14183666 14188888 ECH