Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01413 ATGGGCAAGTCACCGGGAAAATGGATCAAAACTGTACTGTTTGGGAAAAAGTCATCCAAATCAAATATTTCAAAAGGAAGAGAGAAGCTTGTTAATCAAAAAGAAGGAGTAGTTTCTCCCAAGGTGTCAGAAACTGGTTTGGCTTTAGAGCCAACCCCCAATACTATCACCAGACATGAGGAAGACCTGTTGCTGGAGAATAAAGAAGCAGAAAATATTTTACCTGGAAATCAAGAAATTGATTCAATGGGATCTGTTCATCAAGATGCACCAGTTGATCCAGAGAAAATGAGGCTGGAGGAAGCAGCTACAAAGGCACAGGCTGCTTTTAGGGGTTATTTGGCTCGGAGAGCATTTAAGGCCCTAAAAGGCATAATAAGGTTGCAAGCACTTATTCGTGGGCACTTGGTTAGGAGACAAGCTGTTAGTACATTATGTTGTATGTATGGAATTGTCAAGTTACAAGCACTTGTTCGTGGAGGAAGAGTTAGACAGTCTGATGTTGGTTTTGAAATTCGTGAAAAGTGCAATCTATTGAAGCCTCTGGATGGAAAACTTGTCAATCCAATTACTATATCCACAGAAATTATGAAGCTATCAGCAAATGCTTTCATCCGTAAGCTTCTTGGTTCATCAACTACAATAATGGCCTTGCGTTTGCAATATGTTCGTGGCGATCCAAATTCTGTTCTAAGTTGGTTGGAGCGCTGGTCAACATCTCACTTTTGGAAACCAGTTCCCCAACCCAAGAAAATTCGGGATGCTAAGTCTCAGAGGAAGCAGGGTAATATTTCTGTTGGAGATGCTCAAATGAGCAAGTCAAAACGTACTCACAGAAAGCTTCCTACTGCAAATTTTGACTCAGTCCCAGCTCAAGCAAATCCTGAACTTGAGAAACCAAAACGAAACATAAGGAAAATTCCAAGCCAACCCACAGATCCTGTGCAGGAAAATCCACAAGCTCAGCCTCCTACTGCTAATTCTGACTCAATCCCAGTGCAGGCAAATCCTGAATTTGAGAAACCAAAACGAAACATAAGAAAAATTCCTAGCCAACCCTCGGAACCTGTCCAGGAAAATCCACAAAGTGAGCTTGAAAAGGTTAAACGTAGCTTGAGGAAGGTTCATAACCCAGTTGTTGAGAATGCTGTTCTGTCAGAAATTGAATCTGAGACTCCAAGGCTGCATTTGGAAAAGGAAACAGTTACCTTAAGTCTTGGTGTTTCAGAACAAGGGGTCATTAGTTCTAATGAGAAGGTCAAGAAGGACGCAACATTAACCATTTCCAGTGCGTCAGATATAGGAATTACTCCTAGACATTCAGTTAGTAAGGAGGTGTCTGAAACTCCAGGCAGCAATCAAGTGACTGTGGAATTGCAGCCCTTGACAGAGATTACAAGCAAAGATAAAAATATTTCTGATGATGAAGTAAAACATGAGCCCGGAGATTTACCAGAAACTATTTATAAAGATGAAAATTCTCACTTAACAAATGGAGACATGAGTCACAAGGAAGATCCAACAGGCAGTGAAAACCAGAAACCAACCCGGAAAGCCTCAATTGTAGCAAAGCAGGAACGTGCAGAGAATGGTTTACAGAATAGTCCAACATTACCAAGTTATATGGCAGCAACTGAATCTGCGAAGGCAAAGTTGAGGGCACAAGGATCCCCAAGATTTGGACAAGATGGAAGTGAGAGAAATAGTCATGGTCGGCGACATTCTCTGCCATCTTCAACTAACAGCAAAATCAGTTCACATTCACCTAGGACACAGAGACCAGTGCAAGCAGGTGGCAAAGGGGGCCAGAGAAGTGACAAAACTGTATCAACTTCTAGAGATGCAAATGGTGAAAGGTAA 1860 0.4177 MGKSPGKWIKTVLFGKKSSKSNISKGREKLVNQKEGVVSPKVSETGLALEPTPNTITRHEEDLLLENKEAENILPGNQEIDSMGSVHQDAPVDPEKMRLEEAATKAQAAFRGYLARRAFKALKGIIRLQALIRGHLVRRQAVSTLCCMYGIVKLQALVRGGRVRQSDVGFEIREKCNLLKPLDGKLVNPITISTEIMKLSANAFIRKLLGSSTTIMALRLQYVRGDPNSVLSWLERWSTSHFWKPVPQPKKIRDAKSQRKQGNISVGDAQMSKSKRTHRKLPTANFDSVPAQANPELEKPKRNIRKIPSQPTDPVQENPQAQPPTANSDSIPVQANPEFEKPKRNIRKIPSQPSEPVQENPQSELEKVKRSLRKVHNPVVENAVLSEIESETPRLHLEKETVTLSLGVSEQGVISSNEKVKKDATLTISSASDIGITPRHSVSKEVSETPGSNQVTVELQPLTEITSKDKNISDDEVKHEPGDLPETIYKDENSHLTNGDMSHKEDPTGSENQKPTRKASIVAKQERAENGLQNSPTLPSYMAATESAKAKLRAQGSPRFGQDGSERNSHGRRHSLPSSTNSKISSHSPRTQRPVQAGGKGGQRSDKTVSTSRDANGER. 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01413 619 Gene3D - 96 145 - -
Seca12g01413 619 PANTHER IQ-DOMAIN 5-RELATED 1 585 - -
Seca12g01413 619 MobiDBLite consensus disorder prediction 309 334 - -
Seca12g01413 619 MobiDBLite consensus disorder prediction 468 490 - -
Seca12g01413 619 MobiDBLite consensus disorder prediction 496 512 - -
Seca12g01413 619 ProSiteProfiles IQ motif profile. 99 127 IPR000048 GO:0005515
Seca12g01413 619 MobiDBLite consensus disorder prediction 407 467 - -
Seca12g01413 619 MobiDBLite consensus disorder prediction 245 370 - -
Seca12g01413 619 MobiDBLite consensus disorder prediction 574 593 - -
Seca12g01413 619 MobiDBLite consensus disorder prediction 407 619 - -
Seca12g01413 619 SMART iq_5 121 142 IPR000048 GO:0005515
Seca12g01413 619 SMART iq_5 98 120 IPR000048 GO:0005515
Seca12g01413 619 ProSiteProfiles IQ motif profile. 123 145 IPR000048 GO:0005515
Seca12g01413 619 MobiDBLite consensus disorder prediction 527 542 - -
Seca12g01413 619 Pfam Protein of unknown function (DUF4005) 525 605 IPR025064 -
Seca12g01413 619 Pfam IQ calmodulin-binding motif 101 120 IPR000048 GO:0005515
Seca12g01413 619 Pfam IQ calmodulin-binding motif 123 140 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01413 Seca-Chr12 14159383 14166700 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01413 1 617 IQD Protein Family AT1G74690 41.524 6.78e-119 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01413 - - lja:Lj0g3v0315489.1 954.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01662 10 18200212 18208159 Seca12g01413 12 14159383 14166700 ECH
Seca12g01413 12 14159383 14166700 Seca12g01413 12 14159383 14166700 ECH