Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01406 ATGGAAGAAGATCAAGAATTCAAACACGTTTGCAAGTTCTGCAGCAAGAGCTTCCCTTGTGGTAGATCCTTGGGAGGTCACATGAGGTCTCATGTCACAAACTTGTCATCATCTGAGACAGAAGAAAAACAAAAACAAAAACAAAAGCTTTCTTCTACAAAGACTAATGCTGGCTATGGTCTAAGGGAGAATCCCAAGAAGACTTGGAGAATTTCTGATTCAAGTGAAGACAATTTGGTCTCTGACAAGTTCTGCAGGGAGTGTGGCAAAAAGTTTCCCTCTTGGAAAGCTTTGTTTGGGCACATGAAGTGTCACTCTGAGAAAGAAAGAGTTTCAAAGTCTAATAGCTTGGAGGATCAAGATTCTTGGACTTGGACTAATAATAATGCTAATGCTACACAGAAGCTGGTCATGGATAGCCAATCTGATAATGAAACCACTGCTCCAAATCGAAGAAGGAGATCAAAGAGAAGAACAAGGTACATGTTTGGTCCTGCTCCAACAACTTCTTCTGTGTCTTTTGCAAATCCTTCTTCTTCTTCTCTTTCTGAGGTTGAACAAGAGCAAGAAGAGGTTGCTATGAGTTTGATGATGCTTAGTAGAGATGTGAGTCCTTGGAGTGGTCTTCATTCTGTTGCTGAGTCTTCTGATAATAACTCTGTTTACTTTGAAGCTCGATCTTCAGTTCGAACTAATCTTCTTACTAAAATTAAAGGTAACAAGAAGCTTCCTCCTACTTCCAATATAGAAAACAAAAAGTGGGAGTTTGGTAATTCTGTTTCTGCAAATTTGAACTCCAAAGGGAAAAGTTCAGTGCTTTTGGTTACTCCTGAGGTTCCTGAAAATGGATTTAGGATGAACAAAGCTGGAGCTTCCATTAAGGGGTTCTTCAAGAATGATAAAGCTAATAAGTATGAGCTTGATTACTTCTCTGCATCAGAGGATTCTGAAGGTGAACAGGGGAATAACAGAGTCAATGGAACAGAATATGTTTTATCAAAATCAGCTAAAGGTACTAACAAGAACAGTTCAATCAAGACAAAGTTTTTGGATTCTGAATTGAAGTCAAATTCCCTTAAGAATTGGGTGAACAAGTCTTCAGAAGCTGAATTAAGCAAGAGCTCTAATAAGAGAGGCAAGTTTGAATGTACTACTTGCAACAAAATCTTCCACTCATATCAAGCTCTTGGAGGTCATAGAGCTAGTCATAAGAAGATCAAAGGATGCTTTGCTTCAAGAAATGAGAGCAGTGAAAACAGCATTGAAACTGAACTCTATCCTGAACCAACAACTGAAAGCAAGCTCATGAAGAACAGTGAAAGTGAATATGTGGTTGAACATGAAGTGGGTGGTGGTTTTCATAATGAGGCAGAGACAGTTACAGAGTCCAAGAAGAGCAAAGTGCATGAGTGCCCAATTTGTCTTAAGGTTTTTCCATCTGGACAAGCATTGGGTGGCCATAAGAGATCTCATTTGGCTGGTGGGTCAGAGAGTAGAAACTTTCAAACAGTTGTGCTTCAGGAACAAGTGCCAGAAATTAGGGACTTCCTTGATCTTAATCTTCCTGCTGCTACTACTGAGGAGGAAAGTAATACTAATAGCCATGCTGACTCTAACAGACCCTGGTGGGTAGTGGAAGGAAACCACAAACAGGAGGCACTGATAGGCTTGACTTGA 1677 0.3995 MEEDQEFKHVCKFCSKSFPCGRSLGGHMRSHVTNLSSSETEEKQKQKQKLSSTKTNAGYGLRENPKKTWRISDSSEDNLVSDKFCRECGKKFPSWKALFGHMKCHSEKERVSKSNSLEDQDSWTWTNNNANATQKLVMDSQSDNETTAPNRRRRSKRRTRYMFGPAPTTSSVSFANPSSSSLSEVEQEQEEVAMSLMMLSRDVSPWSGLHSVAESSDNNSVYFEARSSVRTNLLTKIKGNKKLPPTSNIENKKWEFGNSVSANLNSKGKSSVLLVTPEVPENGFRMNKAGASIKGFFKNDKANKYELDYFSASEDSEGEQGNNRVNGTEYVLSKSAKGTNKNSSIKTKFLDSELKSNSLKNWVNKSSEAELSKSSNKRGKFECTTCNKIFHSYQALGGHRASHKKIKGCFASRNESSENSIETELYPEPTTESKLMKNSESEYVVEHEVGGGFHNEAETVTESKKSKVHECPICLKVFPSGQALGGHKRSHLAGGSESRNFQTVVLQEQVPEIRDFLDLNLPAATTEEESNTNSHADSNRPWWVVEGNHKQEALIGLT. 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01406 558 ProSitePatterns Zinc finger C2H2 type domain signature. 383 403 IPR013087 -
Seca12g01406 558 SMART c2h2final6 9 31 IPR013087 -
Seca12g01406 558 SMART c2h2final6 469 491 IPR013087 -
Seca12g01406 558 SMART c2h2final6 381 403 IPR013087 -
Seca12g01406 558 SMART c2h2final6 83 105 IPR013087 -
Seca12g01406 558 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 543 - -
Seca12g01406 558 SUPERFAMILY beta-beta-alpha zinc fingers 9 105 IPR036236 -
Seca12g01406 558 MobiDBLite consensus disorder prediction 134 182 - -
Seca12g01406 558 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Seca12g01406 558 Gene3D Classic Zinc Finger 6 105 - -
Seca12g01406 558 ProSiteProfiles Zinc finger C2H2 type domain profile. 381 408 IPR013087 -
Seca12g01406 558 MobiDBLite consensus disorder prediction 164 182 - -
Seca12g01406 558 SUPERFAMILY beta-beta-alpha zinc fingers 381 491 IPR036236 -
Seca12g01406 558 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 31 IPR013087 -
Seca12g01406 558 ProSiteProfiles Zinc finger C2H2 type domain profile. 469 491 IPR013087 -
Seca12g01406 558 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Seca12g01406 558 MobiDBLite consensus disorder prediction 23 63 - -
Seca12g01406 558 Pfam C2H2-type zinc finger 85 107 - -
Seca12g01406 558 Pfam C2H2-type zinc finger 381 405 - -
Seca12g01406 558 Pfam C2H2-type zinc finger 9 31 - -
Seca12g01406 558 Pfam C2H2-type zinc finger 468 493 - -
Seca12g01406 558 ProSitePatterns Zinc finger C2H2 type domain signature. 471 491 IPR013087 -
Seca12g01406 558 Gene3D Classic Zinc Finger 378 491 - -
Seca12g01406 558 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01406 Seca-Chr12 14090517 14092250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01406 368 531 C2H2 Transcription Factor Family AT2G45120 40.719 4.12e-29 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca12g01406 zf-C2H2_6 7.8e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01406 - - gmx:102669916 716.457