Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01395 ATGTCAGAACAGGAAACACATTCCTGTGTCTTCCTATTACTCTTCTTTTCCTTCATCCTTCTTTCAGGTAGAGTTGTTGTCGGGGATTCTTTGGACACAGACAAACAGGTTCTGCTGAAGCTGAAAAAGTACCTTGACAACAGAACTCTTGCAGACCAAGGAGGGTACATATATTGGAACACCAACAACTCCAATCCTTGTGAATGGCAAGGAATCAGGTGCAGCAAAGCAAGGAGGGTGGTTGGTATAGACCTCTCTGATAGTGACATCACAGGGGAGATATTCAATAACTTCTCACAACTCACTGAGCTAACACACCTTGATCTCTCTCAGAACACACTCTTTGGAGGGATTCCAGAGGATTTGAGGCGCTGCCAGAAGCTCTTGCATCTCAACCTTTCCCATAATATTCTTGATGGAGAGCTGAACGTGACTGGAATGACAAGTTTGCAAACACTGGACTTGTCAATGAATAGATTTCATGGGGAACTTGGGTTGAATTTCCCTGCCACTTGTGACAATTTAGTCACTCTGAATATCTCAGGTAATAACATGACTGGTACTATTGGTGACTCCTTTGATCAATGTCCCAAGTTGCAGTACTTGGATTTGAGCACCAACAATCTGAGTGGGGGCATATGGATGGGGTTTGCTAGGCTCAGAGAGTTTTCTGTTGCTGAGAACCATCTCACTGGGACCATTCCTCCTGAGGCTTTTCCATGGAATTGTAGCCTTGAAGAACTAGACCTTTCTCAAAATGGGTTTGTTGGTGAGGCACCAAAGGAGGTTGCTAACTGCAAGAATTTAAGCATTCTCAATCTTTCTAGCAACAATTTTACTGGGGCCATTCCCATTGAAATTGGATCCATTTCTGGCCTCAGAGGATTGTACTTGGGAAGCAACAACTTTTCAAGAAATATTCCAGAGTCCCTTCTGAACTTGACCAATTTGGTTTTCTTGGATTTAAGCAGAAACAGATTTGGTAGGGACATACAAGAGATATTTGGGAAATTTAAGCAGGTGAGGTTTCTTCTATTGCACTCCAATTCTTACACTGGAGGATTGATATCTTCAGGAATTCTCACATTGCCAAACATTGTGAGGTTAGACCTAAGCTTCAACAACTTTTCAGGTCCATTACCTGTTGAAATTTCCAAGATGTCAAGTCTGAAATTTTTAATGTTATCATATAACCAATTCAATGGATCTATTCCATCTGAATTTGGAAATATGACTCGCCTGCAAGCACTTGACCTTGCCTTCAACAATTTGAGTGGGCCAATACCACCAAGCCTTGGAAACTTGAGGTCCCTTTTATGGTTGATGCTTGCAGATAATTCGTTAACTGGAAGAATCCCCCCAGAGTTGGGAAACTGTTCAAGCTTGTTATGGTTAAACCTTGCCAACAATAACCTCTCTGGAAGTTTTCCTTCTGAATTGTCCACAATTGGAAGGAATGCAATGACCACATTTGAATCAAATAGGAAAGATGATGGAATGGTTGCTGGCTCTGGTGAATGTTTAGCAATGAAGAGATGGATACCTGCAGATTACCCTCCATTCAGCTTTGTGTATGGCATCTTAACAAGGAAAAATTGTAGAGGCCTTTGGGATAAGTTACTCAAAGGATATGGTATTTTCCCATTTTGCACACCTGGGTCCTCCTTTCGCTTACCCCTAATATCCGGGTATATTCAGTTAAGTGGGAACCAGCTAGGTGGTGAAATCCCTTTAGAGATAGGGAAAATGGTGAACTTCAGTATGTTTCACTTGGGGTTCAACAATTTCTCTGGGAAATTCCCTCCAGAGTTGGGAAGTATTCCACTTGTGGTCTTGAACATGACTAGAAACAAGTTTTCAGGTGAAATTCCACAGGAAATTGGAAACATGAAATGTATGCAGAATCTGGATTTGTCTTACAACAATTTCTCTGGGACTTTTCCTACAAGTTTGAACAACTTGGCTGAGCTTAACAAGTTCAACATCTCCTACAATCCCCTCATAGCTGGTGTAGTCCCATCAACAGGACAATTTGTTACTTTTGAGAAGGATTCATATTTAGGTGACCCCCTCTTAATCCTTCCCAAGTTCATTGACAACACCACAAATGATAAAAACACAACCTTTCACAAAGCCCAGAAAAAGCCCACAAAATTGTCTGTGTTCTTGGTGTTTGTAGCCATAACACTAGTTTTCATGGTATTTGGGCTTCTTACCATAATAGTCTGTGTATTGGTAAAAAGCCCATCAGATGAACCAGGATACCTCTTGAAAGACACAAAAGAATGGCATGATTCCAGCAGCACCGGATCCTCACCATGGTTATCTGATACAGTTAAAGTTATCCGCTTGAACAAGACAGCTTTTACATATGCTGACATTTTGAAAGCAACCAGCAACTTCTCAGAGAGCAGAATTATAGGAAAAGGTGGATTTGGAACAGTGTACAAAGGAGTGTTCCCAGATGGTAAAGAATTGGCAGTGAAGAAGCTTCAAAGGGAAGGACTTGAGGGTGAAAAGGAATTCAGAGCTGAAATGGAGGTTCTTAGTGGTCATGGGTTTGGTTGGCCTCATCCAAACTTGGTCACACTCTATGGTTGGTGCCTAAATGGTTCAGAGAAGATACTTGTTTATGAGTACATAGAAGGTGGAAGCTTGGAGGATTTACTGACAGATAGGACACGTTTGACATGGAGGAGAAGGCTACAAGTAGCAATTGATGTGGCTAGAGCATTAGTCTATTTACACCATGAATGCTACCCTTCTATTGTGCACAGAGATGTAAAGGCTAGCAATGTTCTGTTAGACAAAGAAGGGAAGGCCAAAGTAACAGACTTTGGACTTGCTAGAGTGGTTGATGTTGGGGATAGCCATGTGAGCACAATGGTGGCTGGGACAGTGGGTTATGTTGCACCTGAATATGGACAAACATGGCAAGCAACTACAAAAGGAGATGTTTACAGTTTTGGGGTATTGATTATGGAGTTAGCAACAGGGAGGCATGCAGTGGATGGAGGAGAAGAGTGTTTGGTTGAATGGGCTAGGCGTGTCATGGGTTATGGAAGACATCATGGGTTAAGCCGTTCTATACCAGTTTTGTTAATGGGTTCTGGGCTAGTTGGTGGGGCTGAAGAGATGGGTGAATTGCTAAGAATTGGGGTGAGGTGCACTTCTGAAGTACCACATGCTAGGCCTAATATGAAGGAGGTTCTGGCTATGCTGATTAAGATATCTAACCCCAAAGGGGACTCAAGTTATGGACACCTTGTTTAG 3273 0.4216 MSEQETHSCVFLLLFFSFILLSGRVVVGDSLDTDKQVLLKLKKYLDNRTLADQGGYIYWNTNNSNPCEWQGIRCSKARRVVGIDLSDSDITGEIFNNFSQLTELTHLDLSQNTLFGGIPEDLRRCQKLLHLNLSHNILDGELNVTGMTSLQTLDLSMNRFHGELGLNFPATCDNLVTLNISGNNMTGTIGDSFDQCPKLQYLDLSTNNLSGGIWMGFARLREFSVAENHLTGTIPPEAFPWNCSLEELDLSQNGFVGEAPKEVANCKNLSILNLSSNNFTGAIPIEIGSISGLRGLYLGSNNFSRNIPESLLNLTNLVFLDLSRNRFGRDIQEIFGKFKQVRFLLLHSNSYTGGLISSGILTLPNIVRLDLSFNNFSGPLPVEISKMSSLKFLMLSYNQFNGSIPSEFGNMTRLQALDLAFNNLSGPIPPSLGNLRSLLWLMLADNSLTGRIPPELGNCSSLLWLNLANNNLSGSFPSELSTIGRNAMTTFESNRKDDGMVAGSGECLAMKRWIPADYPPFSFVYGILTRKNCRGLWDKLLKGYGIFPFCTPGSSFRLPLISGYIQLSGNQLGGEIPLEIGKMVNFSMFHLGFNNFSGKFPPELGSIPLVVLNMTRNKFSGEIPQEIGNMKCMQNLDLSYNNFSGTFPTSLNNLAELNKFNISYNPLIAGVVPSTGQFVTFEKDSYLGDPLLILPKFIDNTTNDKNTTFHKAQKKPTKLSVFLVFVAITLVFMVFGLLTIIVCVLVKSPSDEPGYLLKDTKEWHDSSSTGSSPWLSDTVKVIRLNKTAFTYADILKATSNFSESRIIGKGGFGTVYKGVFPDGKELAVKKLQREGLEGEKEFRAEMEVLSGHGFGWPHPNLVTLYGWCLNGSEKILVYEYIEGGSLEDLLTDRTRLTWRRRLQVAIDVARALVYLHHECYPSIVHRDVKASNVLLDKEGKAKVTDFGLARVVDVGDSHVSTMVAGTVGYVAPEYGQTWQATTKGDVYSFGVLIMELATGRHAVDGGEECLVEWARRVMGYGRHHGLSRSIPVLLMGSGLVGGAEEMGELLRIGVRCTSEVPHARPNMKEVLAMLIKISNPKGDSSYGHLV. 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01395 1090 Gene3D Transferase(Phosphotransferase) domain 1 881 1086 - -
Seca12g01395 1090 CDD STKc_IRAK 807 1077 - -
Seca12g01395 1090 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 243 1076 - -
Seca12g01395 1090 Gene3D Ribonuclease Inhibitor 30 169 IPR032675 -
Seca12g01395 1090 SUPERFAMILY L domain-like 217 479 - -
Seca12g01395 1090 Gene3D Ribonuclease Inhibitor 332 496 IPR032675 -
Seca12g01395 1090 Gene3D Ribonuclease Inhibitor 170 238 IPR032675 -
Seca12g01395 1090 SMART LRR_typ_2 314 337 IPR003591 -
Seca12g01395 1090 SMART LRR_typ_2 435 459 IPR003591 -
Seca12g01395 1090 SMART LRR_typ_2 411 434 IPR003591 -
Seca12g01395 1090 SMART LRR_typ_2 217 241 IPR003591 -
Seca12g01395 1090 SMART LRR_typ_2 387 410 IPR003591 -
Seca12g01395 1090 SMART LRR_typ_2 101 125 IPR003591 -
Seca12g01395 1090 SUPERFAMILY L domain-like 564 669 - -
Seca12g01395 1090 Pfam Protein kinase domain 802 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01395 1090 SUPERFAMILY RNI-like 77 284 - -
Seca12g01395 1090 Pfam Leucine rich repeat N-terminal domain 32 75 IPR013210 -
Seca12g01395 1090 SUPERFAMILY Protein kinase-like (PK-like) 783 1076 IPR011009 -
Seca12g01395 1090 ProSitePatterns Protein kinases ATP-binding region signature. 807 830 IPR017441 GO:0005524
Seca12g01395 1090 Pfam Leucine rich repeat 149 209 IPR001611 GO:0005515
Seca12g01395 1090 Pfam Leucine rich repeat 364 424 IPR001611 GO:0005515
Seca12g01395 1090 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 586 672 - -
Seca12g01395 1090 ProSitePatterns Serine/Threonine protein kinases active-site signature. 923 935 IPR008271 GO:0004672|GO:0006468
Seca12g01395 1090 SMART serkin_6 801 1081 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01395 1090 FunFam Putative LRR receptor-like serine/threonine-protein kinase 338 499 - -
Seca12g01395 1090 Gene3D Phosphorylase Kinase; domain 1 767 880 - -
Seca12g01395 1090 FunFam serine/threonine-protein kinase BRI1-like 2 760 880 - -
Seca12g01395 1090 Gene3D Ribonuclease Inhibitor 239 331 IPR032675 -
Seca12g01395 1090 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 239 331 - -
Seca12g01395 1090 ProSiteProfiles Protein kinase domain profile. 801 1077 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01395 1090 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 49 238 - -
Seca12g01395 1090 Gene3D Ribonuclease Inhibitor 561 710 IPR032675 -
Seca12g01395 1090 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 881 1082 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01395 Seca-Chr12 13937199 13941645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01395 30 1082 Receptor kinase-like Gene Family AT4G39400 32.678 4.63e-148 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Seca12g01395 Pkinase 6.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01395 - - gmx:100783886 1778.84