Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01390 ATGGGGTGTGTGGTTGTGAAGCAGGGGGTGTCGGTGACGCCTGCTATTGACCACTCAGTTGAGTCGGAGAAGAACAGGAAGAAGAAGAGTGAGTCAGTGGGAGCGAGTCGGAGTGAGGTGGGTGAGTCAGGGAGAGCGAGTTCAAATGGTGGAAGTGAGTCTCTGAGCTTCAGATTGGGGAACCTGAATAAGTATGTGGAGGGGGAACAAGCCGCCGCCGGTTGGCCGGCTTGGCTCAGCGCCGTCGCGGCTGAAGCCATTCACGGTTGGGTTCCTCTCAGAGCTGATGCTTTTGAGAAACTTGACAAGATTGGGCAGGGTACGTATAGTAGTGTTTTCCGAGCTAAGGAGATTGAGACTGGGAAGATAGTGGCTCTGAAGAAGGTGAGGTTTGACAATTTTGAGCCAGAAAGTGTGAGGTTCATGGCAAGGGAAATATTGATTCTTAGAAGGCTTGATCATCCAAACATCATTAAACTGGAGGGCTTGATTACTTCCAGATTGTCTTGTAGCATCTACCTTGTATTTGAGTACATGGAGCATGACATCACAGGGCTCTTGTCTAGACCAGAAATCAAGTTCAGTGAATCACAGGTCAAATGCTACATGAAACAGTTGTTATCTGGTCTTGAGCATTGTCACTCAAGGGGTGTAATGCACCGGGACATTAAAGGATCAAATCTTCTAGTGAATAATGAAGGGATATTAAAGGTGGCAGATTTTGGATTGGCAAATTTCTCCAATTCTGGGAACAAGCAGCCCCTCACCAGTCGTGTGGTCACCTTATGGTACCGACCTCCAGAACTTTTGCTTGGTTCAACAGATTATGGTCCATCTGTGGATCTCTGGAGTGTTGGTTGTGTGTTTGCAGAGCTACTAGTTGGGAAGCCTATACTTAAAGGGAGAACAGAGGTTGAACAATTGCACAAAATATTCAAGCTTTGTGGCTCACCGCCTGATGAATACTGGAAAAAGACCAAACTTCCTCATGCAACATTGTTCAAGCCACAGCAACCATATGATAGTTGCCTCAGAGAGACATTTAAAGATTTTCCAGCATCCAGTATAAACTTGTTACAAACTCTTCTTTCTGTTGAGCCAAACAAACGTGGGACTGCCTCATCTGCTCTCTCATTAGAGTATTTCAAAACAAAACCTTATGCATGTGACCCATCAAGCTTACCGGTATACCCACCTAGCAAAGAGATTGATTCAAAACATGAGGAGGAGTCAAAAAGGAAAAAGATTGGTGGGCGAGTTTGTGGACCTGAAACAAGAAAACCATCAAGAAAGCCACTAGGACTAAGTAAATTAGCCCCAGCAGAGGATTTGGGAAGTCAAATTCAAACTTCCCTAAAGATGGATGATAAATCTGTCCACATCCTTAAAGAAGAGAACACTAACATAGATGAGGAGGCACCAAAGCCATCTAATGGTAAACCAGAAGATGCTTCCCATATGAAGAATGCATCTAAAGCAGATATTCCCTTTCCACCATTACAAGTCTCAAAGTCTAGTGGGTTTGCATGGGCTAAAAGGCGTAAAGATGACACTTCAACTAGATCACACAGTCGATCTATTTCTAGAGGATATATTAATTCATTAGAAGCTTCTACACTAAATTCAAGGAATAATTCTGAGTCCAGAAACTATGAAAATAAGGAACTTCTTGGGGGACGTACAAGCTCTAGAGGCCATGACCTACTTGAAATTTCTAAGCTTGCAATGCAAAATCAATGGAGTAAGTTTGATCGTCCAGATTCATTTGATACTTCTGAAGAGTACCATTCACAAGAACTGTCTATGGTGCATTATCATAGACAAGATTCACTCTCCAAGAGAAGCAACCTGGATCAAGGAGAGAAGGTTGAATTTTCAGGGCCCCTACTATCTCAAATGCATACAGTTGATGAGCTCTTAGAAAGACATGAGCGTCACATCCGGCGTACTGTCAGAAGATCATGGTTTCAGAGAGGTAAGAAGCATGGGAAGTAA 1995 0.4356 MGCVVVKQGVSVTPAIDHSVESEKNRKKKSESVGASRSEVGESGRASSNGGSESLSFRLGNLNKYVEGEQAAAGWPAWLSAVAAEAIHGWVPLRADAFEKLDKIGQGTYSSVFRAKEIETGKIVALKKVRFDNFEPESVRFMAREILILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLSRPEIKFSESQVKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFSNSGNKQPLTSRVVTLWYRPPELLLGSTDYGPSVDLWSVGCVFAELLVGKPILKGRTEVEQLHKIFKLCGSPPDEYWKKTKLPHATLFKPQQPYDSCLRETFKDFPASSINLLQTLLSVEPNKRGTASSALSLEYFKTKPYACDPSSLPVYPPSKEIDSKHEEESKRKKIGGRVCGPETRKPSRKPLGLSKLAPAEDLGSQIQTSLKMDDKSVHILKEENTNIDEEAPKPSNGKPEDASHMKNASKADIPFPPLQVSKSSGFAWAKRRKDDTSTRSHSRSISRGYINSLEASTLNSRNNSESRNYENKELLGGRTSSRGHDLLEISKLAMQNQWSKFDRPDSFDTSEEYHSQELSMVHYHRQDSLSKRSNLDQGEKVEFSGPLLSQMHTVDELLERHERHIRRTVRRSWFQRGKKHGK. 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01390 664 Pfam Protein kinase domain 98 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01390 664 SUPERFAMILY Protein kinase-like (PK-like) 91 389 IPR011009 -
Seca12g01390 664 Gene3D Transferase(Phosphotransferase) domain 1 181 421 - -
Seca12g01390 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Seca12g01390 664 MobiDBLite consensus disorder prediction 401 426 - -
Seca12g01390 664 MobiDBLite consensus disorder prediction 393 442 - -
Seca12g01390 664 MobiDBLite consensus disorder prediction 19 35 - -
Seca12g01390 664 MobiDBLite consensus disorder prediction 16 52 - -
Seca12g01390 664 ProSiteProfiles Protein kinase domain profile. 98 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01390 664 ProSitePatterns Protein kinases ATP-binding region signature. 104 127 IPR017441 GO:0005524
Seca12g01390 664 MobiDBLite consensus disorder prediction 465 526 - -
Seca12g01390 664 FunFam probable serine/threonine-protein kinase At1g54610 85 180 - -
Seca12g01390 664 Gene3D Phosphorylase Kinase; domain 1 85 180 - -
Seca12g01390 664 FunFam probable serine/threonine-protein kinase At1g54610 181 420 - -
Seca12g01390 664 MobiDBLite consensus disorder prediction 465 489 - -
Seca12g01390 664 PANTHER CELL DIVISION PROTEIN KINASE 96 386 - -
Seca12g01390 664 SMART serkin_6 98 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01390 664 CDD STKc_CDK9_like 98 382 - -
Seca12g01390 664 MobiDBLite consensus disorder prediction 509 523 - -
Seca12g01390 664 MobiDBLite consensus disorder prediction 538 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01390 Seca-Chr12 13886401 13891195 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01390 90 416 Core Cell Cycle Gene Families AT5G10270 50.997 5.40e-115 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Seca12g01390 Pkinase 4.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01390 - - gmx:100784406 1143.64