Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01389 ATGGCGCTGTTCAGAAGGTTCTTCTACCGGAAGCCGCCGGATCGGCTTCTGGAGATCTCCGAGAGAGTTTATGTTTTTGATTGTTGCTTCTCCACGGATGTCTTGGAAGAAGATGAATACAGAGATTATATGGGGGGAATTGTGGCTCAGCTACAGGATCACTTTCTAGATGCTTCTTTCATGGTGTTCAACTTCAAAGAAGGGGATAGACGCAGCCAAATCTCAGACATATTTTCTCAATATGACATGACAGTTATGGAGTATCCTCGGCAATATGAGGGTTGTCCCCTTCTTCCTTTAGAAATGATCCATCACTTTCTTCGATCAAGTGAAAGCTGGTTGTCTTTGGAGGGGCAACAGAATGTACTCTTGATGCACTGTGAAAGGGGAGGTTGGCCCGTGCTGGCATTTATGCTAGCAGGTCTTCTATTATATCGGAAACAGTACAGTGGGGAGCAGAAGACTCTTGAAATGGTCCACAAGCAAGCTCCCAGAGAACTACTACACCTTTTATCTCCTTTGAACCCACAGCCTTCTCAGTCTAGATATCTTCAGTATATTTCCAGGAGACATTTGGGTTCTGAGTGGCCACCGTCAGAAACACCCTTGTATTTGGATTGTCTAATTCTTAGAGTCCTTCCATTATTTGATGATGGAAAAGGTTGCAGGCCTGTTGTACGTGTTTATAGTCCGGACCCTTCAAAACCTGCCAACAGAAGTTCAAAGCTGCTTTTTTCAACTTCAAAATCCAAAAAACATGTTCGCCACTACACACAGGCAGAGTGTATGCTCGTGAAAATCGATATCCATTGTCGTGTTCAAGGGGATGTGGTTCTTGAGTGCATACATTTAAATGAAGATTTTATGCGTGAGGAGATGATGTTTAGAGTTATGTTCCATACTGCATTTGTGCGGTCAAATACATTGATGCTGAGCCGTGATGAAATTGATATTTTGTGGGATGCCAAGGATCAATTTCCCAAGGACTTCAAAGCAGAGGTGCTTTTTTTGGACGCTGATGCTGTTATACCTGATCTAAACACAGCCACGGTGAGTGAAGATGCAAATGAGACTGAAAGTGCTGAGACAGAAAGTGCTTCACCTGAGGAATTCTATGAAGTAGAAGAGATTTTCAGCAATGCAATTGATGCACAGGAAGAGAAGGCAGAGTATGATTCCCATGCTTTTCCTGACAATGCAGTGGAAGTGGATGATGAAAATCATAAAGAGGTCTGGAAGGAAGAGTTGGATCCTCCTACTTTTCAGGACTGTACACCAGATGATGGGATTCACAAACAAGTTGGCAAGATGGATTCTGGTATTAGTGTGGTGAAAGATATCTCTGTTGATGATGTGAACTACATGTTCAATGAGAACATGGATTCAGATCCTCATGCAGTAAAGGACATTGCCGTGGATGATGGAGAAATTAAGTCAACTTTCACTGCAGTCACTTCTGATGTGATGAAGCCTCTGGAAACAAAGGAAGTCACTGTGGATGTGCACCAGGAATTAGCAATTCTGCAAAACAAATGTGATGAAGACAATGAAGCAACGGAAAAGGAATTAGACTCCAAGGAAGGGCAGCAGATACCTGATAATTCCAAACAAAATTCTGGTAAACTACTTCCATCTACTGCCAAGAAACAACTTCCATCAAACTCAAAGCCAGTCGGAGACACCTTGGTAGCAAAACAAAAGACTAAACAGCAAGAAACCAATGGTGGTTTTCAGGCAAAACAAGCTAAGCCCACTGCAGTAACTAGGTGGATTCCTTCTAACAAGGGTTCTTACACAAATTCAATGCATGTCTATTATCCACCATCAAGGTATAATAGTGCACCGGCTGCACTGTCAAATCTTAATTCTACAAAGGAGAAAATGGAAGATGCCAAAACAAGATCTTTATCTGCTCCTGTTGTCTCTGCATCAGTTGTTTCTATGGACATGAAAAATGACTTGAAAAGTCGTAAGGTTGCTACATCAAAATCTTCTGGCTACATAGTAGCAGAAATAGATGCAAAACATCCACCATCACCATTACCATCAATTAAAGAGCTTCAGTCGGCTACTCAAGCACAACAACGGAGCTCAGAGCAAGTGCTACAGCCCCCCCAACCGTCTCCCCCTCCGTCTCCATCTCATGCTAGTAACTCTTCACATATTTTTGAACCCTTATCATTACAGGAGGATGTATCACTTCAAGCCTCTCCATCACCACCAGTAACACCATCTTCTTTAGGTGGAAAGGGGTCCATTGCACCGCCGCCGCCACCTCCACCACCGCCACCACCGGTTTTTACATCATTTACTGGACAAAAAGTAAGTGAGAATTTACAGCCTGCAACTTCTCCTTCTTCCTCTCTGCCCCCACCCCCTCCTCCGCCTCCACCTCCACCTCCATATTTTGGGCAGAATAAAGGGAGCTTATTACATTCCCCATCCACCTCCATTTCTGAAGTGCTTACTGCAGTGACCCCTTCAAGGCCACTGCCTCCTCCACCACCACCACTGCCTCCTCCAAGGTATGAAGTTTCATCCACTCCTCCTCCTCCTCCTCCTCCTATATCTTTGACACATACAACTCCAACCCCACCTCCACCTCCCTTAACTAATTCAAATATAGGTTCACCAACACGACCTTTTTTTAGCAAAGCACCACCACCTCCGCCTCCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCCTTTTAGTGGTGCTCCACCACCACCACCACCACCACCAACTCCTTTCAGTAGTGCTCCACCACCACCACCTCCACCTCCTTTTAGTAGTGCTCCACCACCACCACCTCCACCTCCTTTTAGTAGTGCTCCACCACCACCACCTCCACCTCCTTTTAGTAGAGTTCCACCACCACCACCTCCACCTCCTTTTAGTAGTGCTCCACCGCCACCACCTCCACCTCCTTTTAGTAGAGTTCCACCACCACCACCTTCACCTCCTTTTAGTAAAGCTCCTCCACCGCCGCCTCCACCTCCTTTTAGTAAAGCGCCTCCTCCACCACCTCCTCCTCCTTTTAGTAATGCTCCTCCTTCACCACCTCCACCTCCTTTTAGTAATGCTCCTCCTCCACCACCTCCACCTCCTTTTAGTAAAACACCTCCTCCACCACCTCCACCTCCTTTTAGTAGTGCTCCACCACCCCCTCCTCCTCCATTGCGTGGAGCTCCTCCCCCACCTCCCCCTCTTCCTTCATTAAGTGGAGCCCCACCGCCACCTCCACCTCCTCCAATGTCTAGAGCACCACCACCTCCTCCTCCTCCGATGCGTGGAGCACCACCACCACCACCTCCTCCAATGCATGGAGCTCCACCTCCACCACCACCTCCTGGTGGTCGAGGCCCACCTCCTCCACCCCCTCCTGGTGCTCGAGGTCCACCTCCTCCACCTCTTCCCGGTGCTCCTAGACCTCCTGGTGGTGCACCTCCACCACCTCCGCCCTTAGGTTCCAAAGGTGCAAATGTTGGAGCTGATCCAAGAGGTAGAGGCCGTGGATATGCACGCCCCGCAGGAGCTGGTGCAGTGGCACCCCGTCGATCCTCCCTAAAGCCTCTACATTGGAGTAAGGTTACAAGGGCATTGCAAGGAAGTTTATGGGAAGAATTACAAAGACACGGGGAACCTCAAATTGCACCAGAGTTTGATGTTTCAGAGCTAGAGAAGCTTTTCTCCGCGAATGTTCCAAAACCTGCTGATTCAAGTGGCAAATCTGGAGGGCGACGCAAGTCTGTTGGATCTAAAACTGACAAAGTCCACTTGATTGACCTAAGGAGAGCTAACAATACTGAAATTATGCTCACTAAGGTTAAGATGCCACTTCCTGACATGATGGCTGCAGTTCTAGCTCTGGATGAGTCAGTATTAGATGTTGATCAGGTGGAAAATCTCATTAAGTTTTGTCCTACAAAAGAGGAGATGGAACTTTTGAAGGGATACACTGGTGACAAAGAGAATTTGGGGAAGTGTGAACAGTATTTTCTGGAGCTTATGAAGGTGCCAAGGGTGGAGTCAAAATTAAGAGTATTCTCTTTCAAAATTCAGTTTGGGTCTCAGGTTACAGAATTCAAGAAGAGTTTAAACACTGTGAACTCTGCCTGTGAAGAGGTCCGAAAATCTGTCAAACTGAAGGAGATCTTGAAGAAAATTCTTTTTTTGGGCAATACATTGAATCAGGGAACAGCAAGGGGATCTGCAGTTGGGTTCAAGTTGGATAGTCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAATAAGATGACACTGATGCATTATCTTTGCAAGGTCCTAGCTGAAAGATCGCCTGGACTCCTTGATTTTCATCAAGACCTTGTTAGCCTGGAAGCTGCCACTAAGATACAATTGAAGTCATTAGCAGAAGAGATGCAGGCAATCATCAAGGGATTAGAAAAGGTTAAACAAGAGCTTGCTGCATCTGAAAATGATGGACCCGTGTCTGAAGTTTTCCGTAAGACATTGAAAGGATTCATAGCTGGAGCAGAGTCAGAGGTGACATCTTTAACGAACCTATATTCTGTGGTGGGTAGAAATGCAGATGCACTTGCACTATATTTTGGTGAGGATCCTGCTCGATGCCCATTTGAGCAAGTTACTACAACTCTCCTAAATTTCATAAGGTTGTTCCGGAAAGCCCATGAAGAGAATTGCAAACAAGCAGAGTTAGAGAAGAAGAAAGCCGTGAAAGAGGCCGAAATGGAGAAGGCTAAGGGCATCAACTTGACAAAGAAGAGTGCAAAAGATAGTTGA 4791 0.463 MALFRRFFYRKPPDRLLEISERVYVFDCCFSTDVLEEDEYRDYMGGIVAQLQDHFLDASFMVFNFKEGDRRSQISDIFSQYDMTVMEYPRQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVHKQAPRELLHLLSPLNPQPSQSRYLQYISRRHLGSEWPPSETPLYLDCLILRVLPLFDDGKGCRPVVRVYSPDPSKPANRSSKLLFSTSKSKKHVRHYTQAECMLVKIDIHCRVQGDVVLECIHLNEDFMREEMMFRVMFHTAFVRSNTLMLSRDEIDILWDAKDQFPKDFKAEVLFLDADAVIPDLNTATVSEDANETESAETESASPEEFYEVEEIFSNAIDAQEEKAEYDSHAFPDNAVEVDDENHKEVWKEELDPPTFQDCTPDDGIHKQVGKMDSGISVVKDISVDDVNYMFNENMDSDPHAVKDIAVDDGEIKSTFTAVTSDVMKPLETKEVTVDVHQELAILQNKCDEDNEATEKELDSKEGQQIPDNSKQNSGKLLPSTAKKQLPSNSKPVGDTLVAKQKTKQQETNGGFQAKQAKPTAVTRWIPSNKGSYTNSMHVYYPPSRYNSAPAALSNLNSTKEKMEDAKTRSLSAPVVSASVVSMDMKNDLKSRKVATSKSSGYIVAEIDAKHPPSPLPSIKELQSATQAQQRSSEQVLQPPQPSPPPSPSHASNSSHIFEPLSLQEDVSLQASPSPPVTPSSLGGKGSIAPPPPPPPPPPPVFTSFTGQKVSENLQPATSPSSSLPPPPPPPPPPPPYFGQNKGSLLHSPSTSISEVLTAVTPSRPLPPPPPPLPPPRYEVSSTPPPPPPPISLTHTTPTPPPPPLTNSNIGSPTRPFFSKAPPPPPPPPPPPPPPPPPPFSGAPPPPPPPPTPFSSAPPPPPPPPFSSAPPPPPPPPFSSAPPPPPPPPFSRVPPPPPPPPFSSAPPPPPPPPFSRVPPPPPSPPFSKAPPPPPPPPFSKAPPPPPPPPFSNAPPSPPPPPFSNAPPPPPPPPFSKTPPPPPPPPFSSAPPPPPPPLRGAPPPPPPLPSLSGAPPPPPPPPMSRAPPPPPPPMRGAPPPPPPPMHGAPPPPPPPGGRGPPPPPPPGARGPPPPPLPGAPRPPGGAPPPPPPLGSKGANVGADPRGRGRGYARPAGAGAVAPRRSSLKPLHWSKVTRALQGSLWEELQRHGEPQIAPEFDVSELEKLFSANVPKPADSSGKSGGRRKSVGSKTDKVHLIDLRRANNTEIMLTKVKMPLPDMMAAVLALDESVLDVDQVENLIKFCPTKEEMELLKGYTGDKENLGKCEQYFLELMKVPRVESKLRVFSFKIQFGSQVTEFKKSLNTVNSACEEVRKSVKLKEILKKILFLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNNKMTLMHYLCKVLAERSPGLLDFHQDLVSLEAATKIQLKSLAEEMQAIIKGLEKVKQELAASENDGPVSEVFRKTLKGFIAGAESEVTSLTNLYSVVGRNADALALYFGEDPARCPFEQVTTTLLNFIRLFRKAHEENCKQAELEKKKAVKEAEMEKAKGINLTKKSAKDS. 1597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01389 1596 MobiDBLite consensus disorder prediction 349 369 - -
Seca12g01389 1596 MobiDBLite consensus disorder prediction 827 874 - -
Seca12g01389 1596 FunFam Formin-like protein 1180 1568 - -
Seca12g01389 1596 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
Seca12g01389 1596 SMART it6_source 608 1596 IPR015425 -
Seca12g01389 1596 MobiDBLite consensus disorder prediction 671 1188 - -
Seca12g01389 1596 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
Seca12g01389 1596 Coils Coil 1463 1490 - -
Seca12g01389 1596 SMART PTEN_C2_2 198 338 IPR014020 -
Seca12g01389 1596 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Seca12g01389 1596 MobiDBLite consensus disorder prediction 769 784 - -
Seca12g01389 1596 MobiDBLite consensus disorder prediction 512 586 - -
Seca12g01389 1596 MobiDBLite consensus disorder prediction 715 746 - -
Seca12g01389 1596 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1181 1582 IPR015425 -
Seca12g01389 1596 MobiDBLite consensus disorder prediction 808 824 - -
Seca12g01389 1596 Coils Coil 1557 1586 - -
Seca12g01389 1596 Gene3D - 205 336 - -
Seca12g01389 1596 MobiDBLite consensus disorder prediction 530 586 - -
Seca12g01389 1596 Gene3D Formin, FH2 domain 1183 1568 IPR042201 -
Seca12g01389 1596 MobiDBLite consensus disorder prediction 684 702 - -
Seca12g01389 1596 MobiDBLite consensus disorder prediction 785 804 - -
Seca12g01389 1596 Pfam Formin Homology 2 Domain 1187 1556 IPR015425 -
Seca12g01389 1596 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 188 IPR029021 -
Seca12g01389 1596 MobiDBLite consensus disorder prediction 882 1159 - -
Seca12g01389 1596 MobiDBLite consensus disorder prediction 751 768 - -
Seca12g01389 1596 MobiDBLite consensus disorder prediction 512 529 - -
Seca12g01389 1596 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1258 1584 - -
Seca12g01389 1596 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Seca12g01389 1596 MobiDBLite consensus disorder prediction 1234 1256 - -
Seca12g01389 1596 PANTHER FORMIN-J 1091 1591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01389 Seca-Chr12 13841739 13857036 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01389 1 642 FH2 protein (formin) Gene Family AT5G07740 61.398 0.0 785
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01389 - - gmx:100785475 1184.09