LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca12g01387	ATGAGAATTCAGAATAAAGGGGTAGTGAAGCTTCCATCAAGTTCTTACCTTTCCATTCTTTTCCTTATCCCCTTTAGCCTTGCTAACTATGCTTCTTCTGCCACTGAATCTTCTTTCTCACCTCCTGTTAATTATCTCATTGATTGTGGCTCCTCAACCCACACTCAACTCAAAGATGGTAGAACTTTCAAATCTGATCGTGAAACCACTTCTCTTTTATCCATAACTGAAGATTTGCAAATTTCAGTTGATTCCCTTAACATAAGTGTTTCTCCTTCTGTGCCTTTGTATAAGAGTGCTAGAGTTTTCACAGAGGAATCTACATACACTTTTTACATCTCCAAAACTGGTAGACTTTGGATTCGCCTTTACTTCTTCCCTCTCTCTCACCCTTCTTATGATCTAACTAGTGCTGTTTTCTCTGTCCAAACTGATCACTTTGTGCTCTTGCATGAGTTCTCTGTGAGGAACAATGATTCACTTGTTTTCAAGGAATATCTTGTTAATGTTTCTTATAGTAGATTTTCCCTCAAATTTAAGCCTAAGAAAAAATCCTTTGCATTCATCAATGCCATTGAGGTTGTCTCAGCCCCTGACACTCTTATATCTGATTCAGCAACTGCAATTTCCCCACTTAGAGAATTCAAAGGGTTATTGCAATCTGCTCTACAAGTATCCTATAGGGTAAATGTTGGTGGCCAAGCTATAACACCTGATATTGATACCTTGTCAAGAACATGGGAACCTGATAGCTCATATAATATTTTCCCACAAGGCTCTGAGAGTGTTGCTGTATCCAACAAAAGCATCAAATATCCACAAAATGGGGCTACTACACCTTTGATTGCTCCAAAGTTGGTTTATGCAACTGCTGCACATATGAAGGATCCTAGAGTTATGGAACCTAATTTCAATCTCAGTTGGATGATGAATGTGGACAAGAGCTACTCTTATTTGATAAGAATGCACTTTTGTGACATTGTGAGCATAAGTCTTAATCAATTGTACCTCAATGTATACATCAATGGGATTGAGGGTGTGTCAGCTTTAGACCTTTCATCTCAAACCAAATCTCTAGCCACTGCCTATTACAAGGACTTTGTGGTTAGTGCGTCCGCTATCACAAATGGTTCCATCTTAGTTCAAGTTGGACCAGCTAATCTCCAACAAGGTACTTCCAATGCAATTCTGAATGGAATTGAGGTGATGAAAATGAGCAACAATGCTGATAGCTTAGATGGTTTCTTTTCTGTTGATGGGAAATACAAAGGACCAAGTTCAACATGCACATCATTGAAAATTGCTGCTAGTATTGGCTTAGGATTGGCTCTAACAGCAATGGTTTTGCTAACAATTGTTTTTATAAAGTGGTTAAGGAGACCTCAAGGTTGGGAAGAGCACAAACGTTTCTCATCATGGCTCCTCCCTATCAATTCAGGATGCAAAAGCACCTCTCAGAACTCAAGCACATTTGGTTCCCACAAGAGCAACAATGTTCACTCTCCCTCTAGTTACCACTCCCCAAGAGGGCCTGAAAAGTTCTTTCCTTTCATTGAACTACAACAAGCCACACAGAACTTTGATGAAAAGAGAGTGATTGGTGTTGGAGGCTTTGGGAAAGTTTACCTTGGAACATTGAAAGATGGAACAAAGGTTGCTATAAAAAGAGGAAATGGTAGTTCAGAACAAGGCATCAATGAGTTCAGAACAGAATTAGACACACTTTCAAAGCTACGCCATCGCCACCTAGTCTCACTGATGGGGTTCTGTGATGAAAATTCAGAGATGGTTCTTGTATATGAGTACATGTCTAATGGCCCATTTCGTTCCCACCTTTATGGTTCCAATCTCCCTCCTTTGTCATGGCAAAAAAGGCTTGAAATATGCATTGGTGCTGCTCGTGGATTGCATTATCTCCACACTGGTGCAGCTCAAAGCATCACACACCGTGATGTGAAGACAACAAATATCCTCTTAGATGAAAACTATATTGCAAAAGTTTCAGACTTTGGCTTATCAAAAGTTGTCCCAGAGAAAGCTCAAGTGAGCACTGCTGTGAAGGGTAGTTTTGGATACCTTGATCCTGAATACTTCAGAAGCCAACAACTAACACAAAAATCTGATATTTACTCTTTTGGGGTAGTCCTCATTGAGGTGCTATGTGCTAGGCCAGTTGTTTGCCCAACACTACCAAGGGAACAAGCTAACTTGGCTGATTGGGCAATGAAACTTCACAGAATAGGCATGCTTCATAAGGCAATTGATCCACACATTGTTGACACTATAAGTCCTGAATCTTTCAAGATTTTTGTGTTGGTTGCTGAGAAATGTCTAGCAGATCATGGTGTTGATAGGCCTAGTATGGGGGATGTGTTGTGGCATTTAGAACATGCTTTGCAGATACAGGTAGCTGCTTCACAGATTAATGCAACTAAAAGCACATGTCCAAATTCTTTTCAACACCCAAATGAGTATGATAATATAGCATATCACTCAGGTGATCCCACAAGTGATGTGTCTGAGAGCACAAATGATAATTATGTTCTGTTTTCTCAGATGGTTAACTTTAATGGAAGGTAA	2580	0.3984	MRIQNKGVVKLPSSSYLSILFLIPFSLANYASSATESSFSPPVNYLIDCGSSTHTQLKDGRTFKSDRETTSLLSITEDLQISVDSLNISVSPSVPLYKSARVFTEESTYTFYISKTGRLWIRLYFFPLSHPSYDLTSAVFSVQTDHFVLLHEFSVRNNDSLVFKEYLVNVSYSRFSLKFKPKKKSFAFINAIEVVSAPDTLISDSATAISPLREFKGLLQSALQVSYRVNVGGQAITPDIDTLSRTWEPDSSYNIFPQGSESVAVSNKSIKYPQNGATTPLIAPKLVYATAAHMKDPRVMEPNFNLSWMMNVDKSYSYLIRMHFCDIVSISLNQLYLNVYINGIEGVSALDLSSQTKSLATAYYKDFVVSASAITNGSILVQVGPANLQQGTSNAILNGIEVMKMSNNADSLDGFFSVDGKYKGPSSTCTSLKIAASIGLGLALTAMVLLTIVFIKWLRRPQGWEEHKRFSSWLLPINSGCKSTSQNSSTFGSHKSNNVHSPSSYHSPRGPEKFFPFIELQQATQNFDEKRVIGVGGFGKVYLGTLKDGTKVAIKRGNGSSEQGINEFRTELDTLSKLRHRHLVSLMGFCDENSEMVLVYEYMSNGPFRSHLYGSNLPPLSWQKRLEICIGAARGLHYLHTGAAQSITHRDVKTTNILLDENYIAKVSDFGLSKVVPEKAQVSTAVKGSFGYLDPEYFRSQQLTQKSDIYSFGVVLIEVLCARPVVCPTLPREQANLADWAMKLHRIGMLHKAIDPHIVDTISPESFKIFVLVAEKCLADHGVDRPSMGDVLWHLEHALQIQVAASQINATKSTCPNSFQHPNEYDNIAYHSGDPTSDVSESTNDNYVLFSQMVNFNGR.	860

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca12g01387	859	ProSitePatterns	Protein kinases ATP-binding region signature.	533	555	IPR017441	GO:0005524
	Seca12g01387	859	SUPERFAMILY	Protein kinase-like (PK-like)	499	796	IPR011009	-
	Seca12g01387	859	Gene3D	Phosphorylase Kinase; domain 1	486	602	-	-
	Seca12g01387	859	SMART	serkin_6	527	795	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca12g01387	859	MobiDBLite	consensus disorder prediction	486	507	-	-
	Seca12g01387	859	Gene3D	Transferase(Phosphotransferase) domain 1	603	817	-	-
	Seca12g01387	859	CDD	STKc_IRAK	533	796	-	-
	Seca12g01387	859	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	647	659	IPR008271	GO:0004672\|GO:0006468
	Seca12g01387	859	FunFam	Receptor-like protein kinase FERONIA	603	817	-	-
	Seca12g01387	859	Pfam	Protein tyrosine and serine/threonine kinase	530	722	IPR001245	GO:0004672\|GO:0006468
	Seca12g01387	859	FunFam	receptor-like protein kinase FERONIA	487	602	-	-
	Seca12g01387	859	PANTHER	OS07G0166700 PROTEIN	514	802	IPR045272	GO:0004714\|GO:0006468
	Seca12g01387	859	FunFam	Putative receptor-like protein kinase	44	198	-	-
	Seca12g01387	859	ProSiteProfiles	Protein kinase domain profile.	527	800	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca12g01387	859	MobiDBLite	consensus disorder prediction	486	505	-	-
	Seca12g01387	859	Pfam	Malectin-like domain	47	405	IPR024788	-
	Seca12g01387	859	FunFam	Receptor-like protein kinase FERONIA	222	407	-	-
	Seca12g01387	859	Gene3D	-	42	198	-	-
	Seca12g01387	859	Gene3D	-	222	407	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca12g01387	Seca-Chr12	13823794	13826394	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca12g01387	35	812	Receptor kinase-like Gene Family	AT5G61350	61.230	0.0	982

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Seca12g01387		Malectin_like	4.3e-37	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca12g01387	-		-	gmx:100814982	1230.7