Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01387 ATGAGAATTCAGAATAAAGGGGTAGTGAAGCTTCCATCAAGTTCTTACCTTTCCATTCTTTTCCTTATCCCCTTTAGCCTTGCTAACTATGCTTCTTCTGCCACTGAATCTTCTTTCTCACCTCCTGTTAATTATCTCATTGATTGTGGCTCCTCAACCCACACTCAACTCAAAGATGGTAGAACTTTCAAATCTGATCGTGAAACCACTTCTCTTTTATCCATAACTGAAGATTTGCAAATTTCAGTTGATTCCCTTAACATAAGTGTTTCTCCTTCTGTGCCTTTGTATAAGAGTGCTAGAGTTTTCACAGAGGAATCTACATACACTTTTTACATCTCCAAAACTGGTAGACTTTGGATTCGCCTTTACTTCTTCCCTCTCTCTCACCCTTCTTATGATCTAACTAGTGCTGTTTTCTCTGTCCAAACTGATCACTTTGTGCTCTTGCATGAGTTCTCTGTGAGGAACAATGATTCACTTGTTTTCAAGGAATATCTTGTTAATGTTTCTTATAGTAGATTTTCCCTCAAATTTAAGCCTAAGAAAAAATCCTTTGCATTCATCAATGCCATTGAGGTTGTCTCAGCCCCTGACACTCTTATATCTGATTCAGCAACTGCAATTTCCCCACTTAGAGAATTCAAAGGGTTATTGCAATCTGCTCTACAAGTATCCTATAGGGTAAATGTTGGTGGCCAAGCTATAACACCTGATATTGATACCTTGTCAAGAACATGGGAACCTGATAGCTCATATAATATTTTCCCACAAGGCTCTGAGAGTGTTGCTGTATCCAACAAAAGCATCAAATATCCACAAAATGGGGCTACTACACCTTTGATTGCTCCAAAGTTGGTTTATGCAACTGCTGCACATATGAAGGATCCTAGAGTTATGGAACCTAATTTCAATCTCAGTTGGATGATGAATGTGGACAAGAGCTACTCTTATTTGATAAGAATGCACTTTTGTGACATTGTGAGCATAAGTCTTAATCAATTGTACCTCAATGTATACATCAATGGGATTGAGGGTGTGTCAGCTTTAGACCTTTCATCTCAAACCAAATCTCTAGCCACTGCCTATTACAAGGACTTTGTGGTTAGTGCGTCCGCTATCACAAATGGTTCCATCTTAGTTCAAGTTGGACCAGCTAATCTCCAACAAGGTACTTCCAATGCAATTCTGAATGGAATTGAGGTGATGAAAATGAGCAACAATGCTGATAGCTTAGATGGTTTCTTTTCTGTTGATGGGAAATACAAAGGACCAAGTTCAACATGCACATCATTGAAAATTGCTGCTAGTATTGGCTTAGGATTGGCTCTAACAGCAATGGTTTTGCTAACAATTGTTTTTATAAAGTGGTTAAGGAGACCTCAAGGTTGGGAAGAGCACAAACGTTTCTCATCATGGCTCCTCCCTATCAATTCAGGATGCAAAAGCACCTCTCAGAACTCAAGCACATTTGGTTCCCACAAGAGCAACAATGTTCACTCTCCCTCTAGTTACCACTCCCCAAGAGGGCCTGAAAAGTTCTTTCCTTTCATTGAACTACAACAAGCCACACAGAACTTTGATGAAAAGAGAGTGATTGGTGTTGGAGGCTTTGGGAAAGTTTACCTTGGAACATTGAAAGATGGAACAAAGGTTGCTATAAAAAGAGGAAATGGTAGTTCAGAACAAGGCATCAATGAGTTCAGAACAGAATTAGACACACTTTCAAAGCTACGCCATCGCCACCTAGTCTCACTGATGGGGTTCTGTGATGAAAATTCAGAGATGGTTCTTGTATATGAGTACATGTCTAATGGCCCATTTCGTTCCCACCTTTATGGTTCCAATCTCCCTCCTTTGTCATGGCAAAAAAGGCTTGAAATATGCATTGGTGCTGCTCGTGGATTGCATTATCTCCACACTGGTGCAGCTCAAAGCATCACACACCGTGATGTGAAGACAACAAATATCCTCTTAGATGAAAACTATATTGCAAAAGTTTCAGACTTTGGCTTATCAAAAGTTGTCCCAGAGAAAGCTCAAGTGAGCACTGCTGTGAAGGGTAGTTTTGGATACCTTGATCCTGAATACTTCAGAAGCCAACAACTAACACAAAAATCTGATATTTACTCTTTTGGGGTAGTCCTCATTGAGGTGCTATGTGCTAGGCCAGTTGTTTGCCCAACACTACCAAGGGAACAAGCTAACTTGGCTGATTGGGCAATGAAACTTCACAGAATAGGCATGCTTCATAAGGCAATTGATCCACACATTGTTGACACTATAAGTCCTGAATCTTTCAAGATTTTTGTGTTGGTTGCTGAGAAATGTCTAGCAGATCATGGTGTTGATAGGCCTAGTATGGGGGATGTGTTGTGGCATTTAGAACATGCTTTGCAGATACAGGTAGCTGCTTCACAGATTAATGCAACTAAAAGCACATGTCCAAATTCTTTTCAACACCCAAATGAGTATGATAATATAGCATATCACTCAGGTGATCCCACAAGTGATGTGTCTGAGAGCACAAATGATAATTATGTTCTGTTTTCTCAGATGGTTAACTTTAATGGAAGGTAA 2580 0.3984 MRIQNKGVVKLPSSSYLSILFLIPFSLANYASSATESSFSPPVNYLIDCGSSTHTQLKDGRTFKSDRETTSLLSITEDLQISVDSLNISVSPSVPLYKSARVFTEESTYTFYISKTGRLWIRLYFFPLSHPSYDLTSAVFSVQTDHFVLLHEFSVRNNDSLVFKEYLVNVSYSRFSLKFKPKKKSFAFINAIEVVSAPDTLISDSATAISPLREFKGLLQSALQVSYRVNVGGQAITPDIDTLSRTWEPDSSYNIFPQGSESVAVSNKSIKYPQNGATTPLIAPKLVYATAAHMKDPRVMEPNFNLSWMMNVDKSYSYLIRMHFCDIVSISLNQLYLNVYINGIEGVSALDLSSQTKSLATAYYKDFVVSASAITNGSILVQVGPANLQQGTSNAILNGIEVMKMSNNADSLDGFFSVDGKYKGPSSTCTSLKIAASIGLGLALTAMVLLTIVFIKWLRRPQGWEEHKRFSSWLLPINSGCKSTSQNSSTFGSHKSNNVHSPSSYHSPRGPEKFFPFIELQQATQNFDEKRVIGVGGFGKVYLGTLKDGTKVAIKRGNGSSEQGINEFRTELDTLSKLRHRHLVSLMGFCDENSEMVLVYEYMSNGPFRSHLYGSNLPPLSWQKRLEICIGAARGLHYLHTGAAQSITHRDVKTTNILLDENYIAKVSDFGLSKVVPEKAQVSTAVKGSFGYLDPEYFRSQQLTQKSDIYSFGVVLIEVLCARPVVCPTLPREQANLADWAMKLHRIGMLHKAIDPHIVDTISPESFKIFVLVAEKCLADHGVDRPSMGDVLWHLEHALQIQVAASQINATKSTCPNSFQHPNEYDNIAYHSGDPTSDVSESTNDNYVLFSQMVNFNGR. 860
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01387 859 ProSitePatterns Protein kinases ATP-binding region signature. 533 555 IPR017441 GO:0005524
Seca12g01387 859 SUPERFAMILY Protein kinase-like (PK-like) 499 796 IPR011009 -
Seca12g01387 859 Gene3D Phosphorylase Kinase; domain 1 486 602 - -
Seca12g01387 859 SMART serkin_6 527 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01387 859 MobiDBLite consensus disorder prediction 486 507 - -
Seca12g01387 859 Gene3D Transferase(Phosphotransferase) domain 1 603 817 - -
Seca12g01387 859 CDD STKc_IRAK 533 796 - -
Seca12g01387 859 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672|GO:0006468
Seca12g01387 859 FunFam Receptor-like protein kinase FERONIA 603 817 - -
Seca12g01387 859 Pfam Protein tyrosine and serine/threonine kinase 530 722 IPR001245 GO:0004672|GO:0006468
Seca12g01387 859 FunFam receptor-like protein kinase FERONIA 487 602 - -
Seca12g01387 859 PANTHER OS07G0166700 PROTEIN 514 802 IPR045272 GO:0004714|GO:0006468
Seca12g01387 859 FunFam Putative receptor-like protein kinase 44 198 - -
Seca12g01387 859 ProSiteProfiles Protein kinase domain profile. 527 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01387 859 MobiDBLite consensus disorder prediction 486 505 - -
Seca12g01387 859 Pfam Malectin-like domain 47 405 IPR024788 -
Seca12g01387 859 FunFam Receptor-like protein kinase FERONIA 222 407 - -
Seca12g01387 859 Gene3D - 42 198 - -
Seca12g01387 859 Gene3D - 222 407 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca12g01387 Seca-Chr12 13823794 13826394 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01387 35 812 Receptor kinase-like Gene Family AT5G61350 61.230 0.0 982
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Seca12g01387 Malectin_like 4.3e-37 CL0202
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01387 - - gmx:100814982 1230.7