Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01384 ATGGAGAATGAGCCTGAGACTGAGGAAACTATTAATTTGAATAGTAAAGAGAACAATTGTGTTAGAAATAATCCTAAGAGTGGTGATGTCTTCATTGACAGAAGTAAAGTCAGGATTTTGTTATGCGATAACGATTCCAAGAGTTCCGAAGAGGTTACTACTCTTCTTCTGGGATGCTCTTATCAGGCTTTTTCAATTCCTCACATGCTCTCTGAGATATGTAAACTATGGGTTTTTTTATGCTTCACAGTTACTTCAGTAAAGTCACCAAGGCAGGTAATTGATGCACTGAATGCAGAGGGGCAATATATAGATATCATACTAGCTGAACTTGACCTTCCGATAAAGAAGGGCATGAAAATGTTGAAGTACATAGCACGGGATAAAGAACTGCGCCGAATCCCTGTTATAATGATGTCTGCACAAGATGAGGTATCTATTGTCGTTAAGTGCTTGAGACTTGGAGCAGCAGACTATCTAGTAAAGCCTTTACGCACTAATGAACTATTAAACTTGTGGACACACATGTGGAGAAGGAGACGCATGCTTGGACTTGTGGAGAACAACATCTTGAATTATGACTTTGATCTGGCAGCATCAGACCCAAGTGATGCCAATACAAACAGTACCACCTTGTTCTCTGATGACACAGATGACAGGTCCAAAAGAAGCACTAATCCAGAGGCAGGAATATCTGTCCAACAAGAACAAGAGGCTAGTATTGCCACAGCTGCTGCTATTGTTGAGGAATTTCCAGATGCTCATGTATCAGAGTATCAGCCTGATGTACCCGGAATTAGTGATCGCCGAACAGGTACTCCGGGGCAGCATCCATCATGCAACAGAATTACTGATGGAAATTTTTCATCTGGTCCAAAGAAGAGCGAACTAAGGATCGGAGAGTCATCAGCCTTTTTTACTTATGTCAAAGCAACAATTCCGAAGAGTAACTTTGAAGAGATTGCTCATGTTGACAATAATGCTACTACACAAGTAAGGGTGGAAGATATGAATCAAGCATGTGCTCAACAGGGGGGTAATGACTTTAAAACACAGGATAATGGAGAAATGTTTGAAAGCCATTCTCAAGATGACTTGCCCAGCAGCAATAGTATCCCTGATTCTTTCTCTCTTGAGAGATCTTGTACTCCACCTGCATCAATGGAAGTTTTACAGCAAAAGAATTACAAGGAAGGACATCCTCAGGGATTGGTGCATCCAAGAAATGGAAGCCATGGTTCTGAGCTTGAACCATCTGGCATGCCTGCCCAGCATGCTTATCCATATTATATTTCAGGAGGTTTTAATCATGTTATGATGCCATCATCAGCCCAACTGTATCAAAAGAATATCCAGGACCTGCATAATCATGCTAATTCATCTATGATTGCACAGTACAATCATCTTCCCCAATGTCCTCCTCATGCAACTGGGATGGCATCCTTCCCATATTATCCAATGAGTATTTGCTTACAACCTGGTCAGGTTTCTACAACTAATTCATGGCCATCATTAGGAGGTTCAAGTTCATGTGAAGTAAAAATAAGTAAAGTTGATAGGAGAGAAGCAGCGTTGATGAAGTTTAGACAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTCAACAGAAAACGACTTGCTGAAAGGCGGCCTCGTGTGAGGGGACAGTTTGTCAGAAAGTTGAATGGCATTGATGTGGATCTTAATGGACAACCTGCTTCCACTGACTATGATGAAGATGATGAAGAGGAGGAAGAAAACCATGGAGCAAGAGATTCCTCTCCCGAGGATGCTTGA 1806 0.4142 MENEPETEETINLNSKENNCVRNNPKSGDVFIDRSKVRILLCDNDSKSSEEVTTLLLGCSYQAFSIPHMLSEICKLWVFLCFTVTSVKSPRQVIDALNAEGQYIDIILAELDLPIKKGMKMLKYIARDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVENNILNYDFDLAASDPSDANTNSTTLFSDDTDDRSKRSTNPEAGISVQQEQEASIATAAAIVEEFPDAHVSEYQPDVPGISDRRTGTPGQHPSCNRITDGNFSSGPKKSELRIGESSAFFTYVKATIPKSNFEEIAHVDNNATTQVRVEDMNQACAQQGGNDFKTQDNGEMFESHSQDDLPSSNSIPDSFSLERSCTPPASMEVLQQKNYKEGHPQGLVHPRNGSHGSELEPSGMPAQHAYPYYISGGFNHVMMPSSAQLYQKNIQDLHNHANSSMIAQYNHLPQCPPHATGMASFPYYPMSICLQPGQVSTTNSWPSLGGSSSCEVKISKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLNGIDVDLNGQPASTDYDEDDEEEEENHGARDSSPEDA. 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01384 601 SUPERFAMILY CheY-like 80 184 IPR011006 -
Seca12g01384 601 Pfam CCT motif 521 563 IPR010402 GO:0005515
Seca12g01384 601 MobiDBLite consensus disorder prediction 204 236 - -
Seca12g01384 601 SMART REC_2 37 173 IPR001789 GO:0000160
Seca12g01384 601 ProSiteProfiles CCT domain profile. 521 563 IPR010402 GO:0005515
Seca12g01384 601 Gene3D - 37 260 - -
Seca12g01384 601 MobiDBLite consensus disorder prediction 344 382 - -
Seca12g01384 601 MobiDBLite consensus disorder prediction 361 382 - -
Seca12g01384 601 MobiDBLite consensus disorder prediction 567 601 - -
Seca12g01384 601 MobiDBLite consensus disorder prediction 272 291 - -
Seca12g01384 601 MobiDBLite consensus disorder prediction 264 293 - -
Seca12g01384 601 PANTHER TWO-COMPONENT RESPONSE REGULATOR 37 265 IPR045279 GO:0009736
Seca12g01384 601 ProSiteProfiles Response regulatory domain profile. 38 177 IPR001789 GO:0000160
Seca12g01384 601 Pfam Response regulator receiver domain 83 171 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01384 Seca-Chr12 13802551 13808694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01384 26 600 Response Regulator Gene Family AT5G61380 49.550 2.96e-178 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Seca12g01384 Response_reg 3.1e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01384 K12127 - gmx:100786522 952.199