Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01381 ATGGAAAGTGGAGGAGGAATTGAAGGACCATGGCGATTTCGCTCTGTCTCCAAATTCATATTATGCGCCCTTTCTGGTGCTCTCACTGGCTGTTTTGCCATTGCCGGGGCCCTCACAGGAGCTATAGCTGGTGCTTTAGCAGCTAAAGCTACAAAGAGTGGTTTTCTCCGGGGAGTTTCATTGGGTGCTATTGCTGGGGCTATACTCTCAGTGGAGGTGTTAGAAGCTTCCCGTGCATACTGGTGTATGGAGCAAACTGGTTCACGGGGGGCATCATCTATGGCAGATTTCATAGAGGAACTTGTTCGTGGGAGGCTTGTAGAGGAATCACTTGCACCTGCTATTTTAACTGCTTACAATTTGCAGTTTGAGCAGGTTGGCATTGCTAATACAGGCTATGATGAGTTTCATGATGTTCATGGCTTAGTAGCGTCCAGAGGATTGTCTGGGGAATCATTGAAGAAGCTACCACACCATATGATCATGAAGGCAGAGAATACTTGCTGTGCAATTTGTTTGCAGGATATTGAAGTAGGCGAAATTGCAAGAAGCTTACCTCGCTGTCACCATACATTTCACTTAATATGTGTAGACAAATGGCTCGTCAAGAATGATTCCTGTCCCGTCTGCAGACAGAATGTCTAG 645 0.462 MESGGGIEGPWRFRSVSKFILCALSGALTGCFAIAGALTGAIAGALAAKATKSGFLRGVSLGAIAGAILSVEVLEASRAYWCMEQTGSRGASSMADFIEELVRGRLVEESLAPAILTAYNLQFEQVGIANTGYDEFHDVHGLVASRGLSGESLKKLPHHMIMKAENTCCAICLQDIEVGEIARSLPRCHHTFHLICVDKWLVKNDSCPVCRQNV. 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01381 214 Pfam Ring finger domain 169 211 IPR001841 -
Seca12g01381 214 CDD RING-H2_NIPL1-like 168 211 - -
Seca12g01381 214 ProSiteProfiles Zinc finger RING-type profile. 169 211 IPR001841 -
Seca12g01381 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 214 IPR013083 -
Seca12g01381 214 SMART ring_2 169 210 IPR001841 -
Seca12g01381 214 SUPERFAMILY RING/U-box 162 214 - -
Seca12g01381 214 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 16 213 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01381 Seca-Chr12 13760724 13765238 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01381 15 214 C3H Transcription Factor Family AT1G74410 56.863 3.09e-75 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01381 - - gmx:100800105 369.777