Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01377 ATGGAAAACGTTTCAGTTTTATCTAAAGCAGAGGATAAGATGGATTTGCCTCCTGGATTTCGGTTTCACCCAACTGATGAAGAGCTTATAAGTCATTACCTATACAAGAAGGTCATTGATACCAACTTCTCTGCCAGAGCCATTGGAGAAGTGGACCTCAATAAGTCTGAGCCTTGGGATTTGCCATGGAAAGCAAAAATGGGAGAAAAAGAGTGGTACTTTTTCTGTGTGAGAGACAGAAAATACCCAACAGGGTTGAGAACAAACAGAGCCACAGAAGCAGGGTATTGGAAGGCAACAGGAAAAGACAAGGAGATTTTCAGAGGAAAATCACTTGTTGGAATGAAGAAAACTCTTGTTTTCTACAAAGGGAGAGCACCCAAAGGAGAGAAAAGCAACTGGGTGATGCATGAATATAGACTTGAGGGTAAATTCTCAGTTCATAATCTACCTAAAACTGCAAAGGTATTGTTATCTCCCTTTCGACCCTGTTTCCTCTGTTTTTATGCCATGAATGAATGGGTTATTTGCAGGGTGTTTCAGAAGAGTTTAGCTGGCAAGAAAACCCATATTTCTGGGATAATGAGATTGGACTCAATAGGAAATGAATTGGGTCCTTCTGGTCTACCACCCCTCACAGATTCATTGCCTTCCATTGCCAAAACCAAATCACTGATTGATTCAGCTTACGTGCCCTGCTTCTCCAATCCAATTGATGTTCAAAGAAACCACCAAGGAGGGGTCTTTGATTCCTTCACTAACTCCATATATGGAATTTCTTCAAATCCATTAGATATTCTTCCAAGAATGACACCTTCTGGCTCACTATACTCCACTCATGGTGTTCAAGTTCAAGCTAATTTGCCATTTACAGGTTCTGTTTACACTATGCAGGACCAGTCCATCCTAAGAGCCTTGTATGAGAACAATGGATCAAACTTGATAAATGGTTTCAAGACAGAGAGGGAAATGGTCAGTGTCTCACAGGAAACAGATTTAACCACTGATATGAATGTAGAAACCTCTTCAGTGGTATCAAATTTTGATATGGGTAGGAGCCACTTTGACAATCAGAATCATCCTCATGCTTCTGTTGCAGCAGTGGACCTTGATGGTTTGTGGAATTACTAA 1131 0.4076 MENVSVLSKAEDKMDLPPGFRFHPTDEELISHYLYKKVIDTNFSARAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFRGKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSVHNLPKTAKVLLSPFRPCFLCFYAMNEWVICRVFQKSLAGKKTHISGIMRLDSIGNELGPSGLPPLTDSLPSIAKTKSLIDSAYVPCFSNPIDVQRNHQGGVFDSFTNSIYGISSNPLDILPRMTPSGSLYSTHGVQVQANLPFTGSVYTMQDQSILRALYENNGSNLINGFKTEREMVSVSQETDLTTDMNVETSSVVSNFDMGRSHFDNQNHPHASVAAVDLDGLWNY. 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01377 376 ProSiteProfiles NAC domain profile. 16 182 IPR003441 GO:0003677|GO:0006355
Seca12g01377 376 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 291 - -
Seca12g01377 376 SUPERFAMILY NAC domain 11 182 IPR036093 GO:0003677|GO:0006355
Seca12g01377 376 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Seca12g01377 376 Gene3D NAC domain 25 185 IPR036093 GO:0003677|GO:0006355
Seca12g01377 376 FunFam NAC domain-containing protein 100-like 25 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01377 Seca-Chr12 13726646 13728808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01377 14 376 NAC Transcription Factor Family AT5G07680 56.593 1.46e-133 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca12g01377 NAM 2.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01377 - - lja:Lj0g3v0155359.1 612.838