Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01375 ATGGCCACCGTCACCACACAAGCTTCTGCCACCCTTTTCAGGCCATGTGCCTCCAAATCAAGGTTCCTTACTGGCTCTTCTACTAAACTAAACAGGGAAGTGGCTGTTAGTTTTAGATCAATGGGGTCTCCTTCATTTACCTCTTTCAAGGTTCAAGCCAAGAAAGGGGAGTGGTTACCAGGCTTGGCCTCTCCATCTTACCTCACTGGCAGTCTTCCTGGTGACAATGGATTTGATCCTCTGGGGCTTGCTGAGGACCCAGAGAACTTGAAGTGGTTTGTTCAAGCTGAGCTTGTCAATGGACGTTGGGCTATGTTGGGTGTTGCAGGAATGTTGCTTCCTGAAGTCTTCACCAAAATTGGTATTATCAATGTCCCCAAATGGTATGATGCTGGGAAAGAAGAGTACTTTGCATCATCCTCAACCCTCTTTGTGATTGAGTTCATTCTGTTCCATTATGTGGAAATCAGAAGATGGCAGGACATTAAGAACCCTGGAAGTGTTAACCAAGATCCCATCTTTAAGCAGTACAGTTTACCCCCAAATGAGGTTGGATACCCTGGTGGCATTTTTAACCCCTTGAATTTTGCACCTACCCTGGAGGCTAAAGAGAAGGAACTTGCCAATGGGAGACTGGCAATGTTGGCATTCTTGGGATTTGTGGTTCAGCACAATGTGACAGGCAAAGGACCATTTGACAACCTGTTGCAGCATCTCTCAGACCCATGGCACAACACCATTGTCCAAACATTGAGTGGCAACTAA 765 0.4627 MATVTTQASATLFRPCASKSRFLTGSSTKLNREVAVSFRSMGSPSFTSFKVQAKKGEWLPGLASPSYLTGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPKWYDAGKEEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFDNLLQHLSDPWHNTIVQTLSGN. 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01375 254 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 15 250 IPR001344 GO:0009765|GO:0016020
Seca12g01375 254 FunFam Chlorophyll a-b binding protein, chloroplastic 65 244 - -
Seca12g01375 254 Gene3D Chlorophyll a/b binding protein domain 65 244 - -
Seca12g01375 254 SUPERFAMILY Chlorophyll a-b binding protein 55 251 - -
Seca12g01375 254 Pfam Chlorophyll A-B binding protein 65 224 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01375 Seca-Chr12 13689670 13691141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01375 58 252 Chloroplast and Mitochondria Gene Families AT3G61470 55.721 1.40e-75 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01375 K08910 - rcu:8263414 478.018