Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01374 ATGGGAAGAGTTAAACTGAAGATAAAGAAATTAGAGAGCACAAGCAACCGACACGTGACTTATTCGAAGCGGAAAAGTGGAATTTTGAAGAAAGCAAAGGAATTATCAATCCTATGTGATATAGATATTGTCCTTCTCATGTTCTCTCCAACAGGAAAGCCTACATTGCTGCAGGGAGAACGCAGCAATCTTGAGGAGGTCATTGCAAAATTTTCTCAACTTAGCCCACAAGAAAGGGCCAAAAGGAAAATGGAAAGCCTTGAAGCACTGAAGAAAACCTTCAAGAAGTTGGATCATGATGTAAAAATACAAGATTTCTTGGGTTCGAGCAGTCAAACTGTAGAGGAATTAACTCATCAAGTGAGGGTTTTACAAGCTCAACTCACAGAAGTACATCAGAGACTGAGCTATTGGAATAATCTGGAGAAGATCAATAACTTAGAACATCTTAGGCAAATGGAAGACTCACTCAAGGAATCAATCAATCGAGTGAATCTACAGAAGGATAATTTAAGAAAGCACCAACTAATTTCACTTGAATGCGCTAACCAGATGCAGGATGGGATGACTTTACCCTTGATGATGGCTGGTCTGCAAGAATCCCAACCCCTGTCTTGGCTTTTGAATAGTGATAATCATCAGTTGATGTTACCCAGTGAACCAAAATTTCTGCCATTTAGTGATAATACCAATAGAGATGCTGAGTGCTCCAATGACATTTCACTCCCAGGATATTCTGGTTATATTGGGAATACTAAACTTGAGGTTGGCAGCTCTCCTCAGGTCACTACTTTGGGTCAGGGAGCTGGTTCCTTGAACGAGATAAATGGAAATGCTTACTTAAATGTACAACATTGTGAGCAGTTTGCATACCCTCCTCCTCCAGATCTTGAGGAAGTAAAACATCACCATACAATGAATAGTAAACCAAACACTGTGGATTACCAAGTTAACAATAGCTTTGATCTGCCCAGATCAATGTTTGAAAATGGGCATCAGTTCTGGAATTCTGCTTCTGGGTCTTGCGGGATTGCCATGTATAATGAAAATGGCTACCCTAGGGTAAGCAGTCATTTTTTGTTTCATTAG 1089 0.4004 MGRVKLKIKKLESTSNRHVTYSKRKSGILKKAKELSILCDIDIVLLMFSPTGKPTLLQGERSNLEEVIAKFSQLSPQERAKRKMESLEALKKTFKKLDHDVKIQDFLGSSSQTVEELTHQVRVLQAQLTEVHQRLSYWNNLEKINNLEHLRQMEDSLKESINRVNLQKDNLRKHQLISLECANQMQDGMTLPLMMAGLQESQPLSWLLNSDNHQLMLPSEPKFLPFSDNTNRDAECSNDISLPGYSGYIGNTKLEVGSSPQVTTLGQGAGSLNEINGNAYLNVQHCEQFAYPPPPDLEEVKHHHTMNSKPNTVDYQVNNSFDLPRSMFENGHQFWNSASGSCGIAMYNENGYPRVSSHFLFH. 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01374 362 Coils Coil 77 97 - -
Seca12g01374 362 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Seca12g01374 362 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Seca12g01374 362 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677|GO:0046983
Seca12g01374 362 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca12g01374 362 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca12g01374 362 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca12g01374 362 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 205 - -
Seca12g01374 362 Coils Coil 114 134 - -
Seca12g01374 362 Coils Coil 147 170 - -
Seca12g01374 362 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Seca12g01374 362 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca12g01374 362 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Seca12g01374 362 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01374 Seca-Chr12 13684427 13689630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01374 1 276 Type I MADS-box Gene Family AT2G03060 51.930 1.21e-90 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca12g01374 SRF-TF 9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01374 - - pvu:PHAVU_003G189100g 625.55