Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01362 ATGGATATTCATCCACTTAGGAGTTGGACCTCTTACTATGACATAGATGAAAATCCATTTCCATTTACATGCCATTTTTCTTTCAGTGGAAATGGTAGTGGTTATTCTGCATTGGATTGGCCAGATGAATTTCTCATGCAAGATAGCTATTTTGATCCTATCCCTCTTATGGAGTGTAACTACTCTGCTGATCCTTTGTATGAAACTCTAGCCATTGAGCCAATACCAAGATTTCAAGACTATGATTTTTATGATGTGAAGAAGGGGTTTTCTCTATGGAACGAAATTGATGCTGGGTTTGATTCAGAAAAGAATGATTTTTTATATTGCAACAATGGTGAGAGTAGTAAGGAAATGATTATGGAAGATGGGAATGTTAAGAGAGGGAGAGAAGAAAGGAGTGGCAGTACTAGAATGTTGTCAAGGAAGACCATATCTCAGTATTTCTATATGCCAATAACACAAGCAGCCAGAGAGCTTAATGTGGGTTTGACACTTTTGAAGAAAAGGTGCAGAGAGTTAGGGATTCGAAGGTGGCCCCACAGGAAGCTCATGAGCCTGCAAACACTCATAAATAATGTACAGGAGCTGGGGAAAGAGGAGGGGCCTGAGAGTGAAGAAAAGTTGAGGAGTGCAATTGAGATATTGGAGAAGGAGAAGAAGCTTATGGAGGAAATGCCAGATATGCAACTTGAAGATCACACAAAAAGGCTTAGACAAGCGTGTTTTAAGGCTAACTATAAGAAGAGGAAGCTCATGGGGCAGATGGAACCACAGACACAGTCTTCTTCTTCTTTCAGTGACTCTGTTAACAGCTATGACTATTTTGAAACAAAGGGTGAATATAGTTTTTAG 855 0.3965 MDIHPLRSWTSYYDIDENPFPFTCHFSFSGNGSGYSALDWPDEFLMQDSYFDPIPLMECNYSADPLYETLAIEPIPRFQDYDFYDVKKGFSLWNEIDAGFDSEKNDFLYCNNGESSKEMIMEDGNVKRGREERSGSTRMLSRKTISQYFYMPITQAARELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLINNVQELGKEEGPESEEKLRSAIEILEKEKKLMEEMPDMQLEDHTKRLRQACFKANYKKRKLMGQMEPQTQSSSSFSDSVNSYDYFETKGEYSF. 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01362 284 PANTHER PROTEIN RKD4 127 268 IPR044607 GO:0003700
Seca12g01362 284 Coils Coil 206 226 - -
Seca12g01362 284 ProSiteProfiles RWP-RK domain profile. 121 208 IPR003035 -
Seca12g01362 284 Pfam RWP-RK domain 140 187 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01362 Seca-Chr12 13592091 13593180 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01362 127 260 AtRKD Transcription Factor Family AT1G18790 67.153 1.92e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Seca12g01362 RWP-RK 4.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01362 - - gmx:100788666 343.969