Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01359 ATGGGGAGGCCTCCTTGCTGTGACAAAATTGGAATTAAGAAAGGACCTTGGACTCCAGAAGAGGACATCATCTTGGTCTCTTACATTCAAGAACACGGACCAGGCAATTGGAGATCAGTTCCCACCAACACAGGTATATTTCTTGCAGGTTTGATGAGATGCAGCAAAAGCTGCAGACTTAGATGGACAAACTATCTACGACCAGGTATCAAACGAGGTAATTTCAGTGATCATGAGGAGAGGATGATTATTCACCTCCAAGCTCTTTTGGGCAACAGATGGGCTGCTATAGCATCATATCTTCCGCAGAGGACAGACAATGACATAAAAAATTATTGGAATACCCATTTGAAGAAGAAGCTAAACAAAAATCAAAGTGGAAGTGGTGATGAGGCTAGTGTTGACCAAGAAGGACATTCATCTTCCTCTTCCTCTTCACAGCCACCAAAAGGTCAATGGGAGAGAAGGCTTCAAACAGATATCCAAATGGCCAAACAAGCCTTATCTGAGGCTTTGTCCCTTCAAAACCCACCACCACCTGATACCAAGCCCTCAATTTCTGAACAGCATGCATCCACATATGCTTCAAGCTTTGAAAACATTTCAAAATTGCTTGAAAACTGGAAGAAATCCCCAAACTCATCATCAACAAATTCATCATATTCCTTCAACTGCAACAACATGGTTACTACTACTACAGGATCCAGTTCTAGTACTGAAGGAGCACAAAGCTGCAACACACAAGATCATCATCATCATGCTGCTGCTGGTTTTGACTCCTTGTTGACCTTCAATAAGTCTGATCATTATATCTCTCGATCTAGGTCGGTTGAAGAAAGGAAGTCAAACTTGGAGATGATGCAACAAGTTCCTCCTTTTACTCTTCTGGAAAAGTGGCTTTTTGATGATGGAGCAGCTGCTCAATGCCATGAAGATCTAATGAACATGTCACTGGAGGAAAGTACTGCTGGTTTGTTTTAG 981 0.421 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGIFLAGLMRCSKSCRLRWTNYLRPGIKRGNFSDHEERMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLNKNQSGSGDEASVDQEGHSSSSSSSQPPKGQWERRLQTDIQMAKQALSEALSLQNPPPPDTKPSISEQHASTYASSFENISKLLENWKKSPNSSSTNSSYSFNCNNMVTTTTGSSSSTEGAQSCNTQDHHHHAAAGFDSLLTFNKSDHYISRSRSVEERKSNLEMMQQVPPFTLLEKWLFDDGAAAQCHEDLMNMSLEESTAGLF. 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01359 326 Pfam Myb-like DNA-binding domain 72 117 IPR001005 -
Seca12g01359 326 Pfam Myb-like DNA-binding domain 14 66 IPR001005 -
Seca12g01359 326 CDD SANT 16 66 IPR001005 -
Seca12g01359 326 SUPERFAMILY Homeodomain-like 11 113 IPR009057 -
Seca12g01359 326 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Seca12g01359 326 MobiDBLite consensus disorder prediction 120 153 - -
Seca12g01359 326 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 235 - -
Seca12g01359 326 FunFam MYB-related transcription factor 13 71 - -
Seca12g01359 326 Gene3D - 13 71 - -
Seca12g01359 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Seca12g01359 326 FunFam Transcription factor MYB30 73 131 - -
Seca12g01359 326 CDD SANT 74 117 IPR001005 -
Seca12g01359 326 Gene3D - 74 147 - -
Seca12g01359 326 ProSiteProfiles Myb-like domain profile. 9 66 IPR001005 -
Seca12g01359 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Seca12g01359 326 SMART sant 13 68 IPR001005 -
Seca12g01359 326 SMART sant 71 119 IPR001005 -
Seca12g01359 326 MobiDBLite consensus disorder prediction 120 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01359 Seca-Chr12 13534493 13535977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01359 1 326 MYB Transcription Factor Family AT5G62470 47.632 7.56e-98 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca12g01359 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01359 K09422 - gmx:100799402 415.231