Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01353 ATGGAGGGAGGTGATGATCTCCACAACCACCACCATCACCACCACCGTCAAAACTTCCCATTCCAGCTTCTGGAGAAAAAAGAAGACCAAGAAGCCGCATCTTGCTCCACTTCCTCCCCATACCCTTCCCTAGCAATCTCCGCAGAACCAAGCACATCCAATTCAAACCGATCCAACAACCAACTCGTTCCCGCACCTACCTCCGAACCTGGAAACAAAAAGCCACCGCCAAAACGAACCTCAACCAAAGACCGTCACACCAAAGTCGAAGGCCGCGGCCGCCGCATCCGAATGCCGGCACTCTGCGCCGCCAGAGTTTTCCAACTAACTCGCGAACTCGGCCATAAGTCCGACGGCGAAACCATCGAGTGGCTCCTCCAACAAGCCGAACCCGCCGTCATCGCCGCCACTGGAACCGGAACAATCCCTGCTAACTTCACCTCACTCAACATATCTCTCAGAAGCTCAGGCTCCTCCATGTCCGTTCCATCTCAACTAAGATCCTCATACTTCAACCCAAACTTCTCCGTTCAACAACGCAGAACCTTGTTCCCTGGAATCGGTTTGTCCTCAGAGAACAGCAACACGTCAACGCTGCTCAATTTCCAATCCAATAACCTAACCACCGCCGCCGGCATGTTGCAGGCGAAGCAGGAAGGCGGCGGCGGTGGTGGCGGCGGCGGCGGCGGTGGTGCTCCGTCTTCGTCGACGTTGGATTTGTCCGAAACTAGCGCGGAGGAAGGTTTGGGAAGGAAAAGAAGAACAACAGAACAAGACTTATCCTCAACGCAGCATCAAATGGGGAGTTATCTGCTGCAGTCGAGTGCAGGGGCGATTCCTGCAAGTCACGCTCAGATTCCAGCGAATATATGGATGGTAGCGAATTCTAATAACCAAGTTATGAGTGGTGATCCTATATGGACATTTCCACAACAATTAGGTTCATCTGTTGGAGGGAGCAGTGGTGGGAATATGAATGAAGGACATTTGAGTATGCTTGCAGGGCTTAGCCCTTATCGACCTGTTTCAGAGTCTCAACAACAGAGTGGGTCACAATCACATCGCGGTGGTAGCCATGATCGACATGATAGCACCAGTCACCACTCTTAG 1110 0.5252 MEGGDDLHNHHHHHHRQNFPFQLLEKKEDQEAASCSTSSPYPSLAISAEPSTSNSNRSNNQLVPAPTSEPGNKKPPPKRTSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSVQQRRTLFPGIGLSSENSNTSTLLNFQSNNLTTAAGMLQAKQEGGGGGGGGGGGGAPSSSTLDLSETSAEEGLGRKRRTTEQDLSSTQHQMGSYLLQSSAGAIPASHAQIPANIWMVANSNNQVMSGDPIWTFPQQLGSSVGGSSGGNMNEGHLSMLAGLSPYRPVSESQQQSGSQSHRGGSHDRHDSTSHHS. 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01353 369 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 30 358 IPR005333 GO:0003700
Seca12g01353 369 Pfam TCP family transcription factor 80 193 IPR017887 -
Seca12g01353 369 ProSiteProfiles TCP domain profile. 82 136 IPR017887 -
Seca12g01353 369 MobiDBLite consensus disorder prediction 317 369 - -
Seca12g01353 369 MobiDBLite consensus disorder prediction 355 369 - -
Seca12g01353 369 MobiDBLite consensus disorder prediction 76 94 - -
Seca12g01353 369 MobiDBLite consensus disorder prediction 340 354 - -
Seca12g01353 369 MobiDBLite consensus disorder prediction 33 67 - -
Seca12g01353 369 MobiDBLite consensus disorder prediction 18 32 - -
Seca12g01353 369 MobiDBLite consensus disorder prediction 245 259 - -
Seca12g01353 369 MobiDBLite consensus disorder prediction 1 94 - -
Seca12g01353 369 MobiDBLite consensus disorder prediction 216 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01353 Seca-Chr12 13430795 13431995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01353 13 151 TCP Transcription Factor Family AT1G69690 69.065 8.76e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca12g01353 TCP 7.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01353 - - psat:127073804 469.159