Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01352 ATGCTAGGTGTCTCTTGCACGAATAGTTTATGTGGAATAATCGGTTCATTATCTGGAATTCTGGATTCAGTTTTTATAAACTTGATTCGCTTCAGGTCTTCTCCTGGTAAAATGAACCAAGGGAAAGTTCCTAAGAGAATTCACAAGGCTGAAAGGGAGAAAATGAAACGTGAACATTTGAATGAACTCTTTCTTGATCTTGCCAATGCACTTGATCTAAATGAGCAGAACAATGGAAAGGCTTCCATATTGTGTGAAGCTTCTAGGCTTCTAAAGGACTTGTTCAGTCAGATTGAGTCCCTCAAGAAAGAAAACGTGTCTCTGTTGTCTGAATCTCATTATGTGACCATGGAGAAAAATGAGCTGAAGGAGGAAAATTGTAGCCTAGAAACTCAAATTGAGAAACTTCAAGGTGAGATACAGGCTAGAGTGGCTCAGTCCAAACCTGACCTGAATGCACCTCCTCATTTGGAACTTGAGCCTCCAGAGCAGACAAATTTTCCAGGACAGAGTCTCCAATTGCCTACCATAGAACCTATGCAGCAAGGACCAGCGGTTTTGGTTGTCCCCTTTCGTCCTGATCTTCAAGCTTCTTTTCCAGCTCCTAATGTTGCTGAGCTCACACCAAAACCTACATCTGTTGTCAGTAAACCACATGCCAGGTATCCCACACCAGCAGATTCATGGCCATCACAGCTGCTTGGAGAGCAATAA 714 0.4272 MLGVSCTNSLCGIIGSLSGILDSVFINLIRFRSSPGKMNQGKVPKRIHKAEREKMKREHLNELFLDLANALDLNEQNNGKASILCEASRLLKDLFSQIESLKKENVSLLSESHYVTMEKNELKEENCSLETQIEKLQGEIQARVAQSKPDLNAPPHLELEPPEQTNFPGQSLQLPTIEPMQQGPAVLVVPFRPDLQASFPAPNVAELTPKPTSVVSKPHARYPTPADSWPSQLLGEQ. 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01352 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 94 IPR011598 GO:0046983
Seca12g01352 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 42 109 IPR036638 GO:0046983
Seca12g01352 237 Coils Coil 91 111 - -
Seca12g01352 237 Gene3D - 41 119 IPR036638 GO:0046983
Seca12g01352 237 Coils Coil 119 139 - -
Seca12g01352 237 MobiDBLite consensus disorder prediction 199 237 - -
Seca12g01352 237 PANTHER TRANSCRIPTION FACTOR BHLH47 32 237 - -
Seca12g01352 237 CDD bHLH_AtILR3_like 49 123 - -
Seca12g01352 237 MobiDBLite consensus disorder prediction 150 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01352 Seca-Chr12 13411948 13415168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01352 37 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 51.754 1.89e-65 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01352 - - gmx:100782436 334.339