Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01345 ATGGACACAGTGATGAAGGGGTGGATTGATGGTCAATCCCTTGGGGCTGCAAAGTCTGGATTGGGAATAGCTGTAGCTGTGAAGAAGCTCAAGCCTGAAGGTTTTCAAGGGCATAAGGAGTGGCTGTCTGAAGTCAATTATCTTGGCCAACTTCATCATCCAAATCTTGTCAACCTTGTTGGATACTGCCTGGAGGGGGATAACCGGCTTCTAGTGTATGAGTACATGGCCAATGGAAGCTTGGAAAATCATCTATTTCGGAAGAGCAGACAAGTACTTCCTTGGGCAACAAGAGTCAAAGTTGCTATTGGTGCTGCTCGAGGTCTCACCTTCCTACATGACTCTAATCAACAAATTATCTACCGTGATTTCAAGGCTTCTAATATTTTATTAGATTCGGTATGTTGGTTAAACATTAGCTTTGCCATGTTACTGTGGGGATTTGGGGAAAATGCTTGCAAACTATGTATGGAATTTAATGCAAAACTCTCAGACTTTGGATTGGCCAAAGCAGGGCCCACTGATGATCGTTCTCATGTTTCCACTCAAGTCCTGGGCACTCAAGGCTATGCTGCTCCTGAGTATATTGCTACAGGTCGGCTGACTACAAGGTGTGATGTCTATAGCTTTGGGGTTGTGCTATTGGAACTACTATCAGGGCGCCATGCTGTTGATAAAACAAAATCCGGAGTGGAACATAATTTGGTAGATTGGGCAAAGCCCTATTTGGGTGATAGGAGGAAGTTGTTCCGGATTATGGACACCAAGTTAGAAGGACAATACCCTCAGAGAGCAGCTTATACAGTTGCAATTCTTGCATTACAATGTATTAGTGAGGCCAAGATTAGACCACAAATGTCTGAGGTTTTGGCTACCTTGGAACATCTCCCAGCTATCAGACATTCAGCTAGCCCATCTAGAGCAGAGGAAAAACCCATCCCAAGTCCCATAAGAGAGAGGGTTTGA 966 0.4441 MDTVMKGWIDGQSLGAAKSGLGIAVAVKKLKPEGFQGHKEWLSEVNYLGQLHHPNLVNLVGYCLEGDNRLLVYEYMANGSLENHLFRKSRQVLPWATRVKVAIGAARGLTFLHDSNQQIIYRDFKASNILLDSVCWLNISFAMLLWGFGENACKLCMEFNAKLSDFGLAKAGPTDDRSHVSTQVLGTQGYAAPEYIATGRLTTRCDVYSFGVVLLELLSGRHAVDKTKSGVEHNLVDWAKPYLGDRRKLFRIMDTKLEGQYPQRAAYTVAILALQCISEAKIRPQMSEVLATLEHLPAIRHSASPSRAEEKPIPSPIRERV. 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01345 321 MobiDBLite consensus disorder prediction 301 321 - -
Seca12g01345 321 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Seca12g01345 321 SUPERFAMILY Protein kinase-like (PK-like) 21 295 IPR011009 -
Seca12g01345 321 Gene3D Transferase(Phosphotransferase) domain 1 77 311 - -
Seca12g01345 321 Gene3D Phosphorylase Kinase; domain 1 2 76 - -
Seca12g01345 321 ProSiteProfiles Protein kinase domain profile. 1 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01345 321 MobiDBLite consensus disorder prediction 304 321 - -
Seca12g01345 321 Pfam Protein tyrosine and serine/threonine kinase 4 291 IPR001245 GO:0004672|GO:0006468
Seca12g01345 321 PIRSF ILK 9 304 - -
Seca12g01345 321 PANTHER OS01G0588500 PROTEIN-RELATED 3 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01345 Seca-Chr12 13245795 13249854 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01345 22 315 Glycoside Hydrolase AT3G07070 48.161 2.54e-87 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca12g01345 PK_Tyr_Ser-Thr 1.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01345 - - gmx:100791844 472.626