Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01335 GTATTGTTTTTTTTGTTTATCTTGAAACAGTATCACCAATACCAGGTTGTGGGGAGAGCTCTTCCTACTGAAAATGATGAACATCCTAAGATCTACAGGATGAAGCTTTGGGCCACCAATGAGGTCCATGCCAAATCCAAGTTCTGGTACTTCTTGAGAAAGCTAAAAAAGGTCAAGAAAAGCAATGGGCAAAAACAAACCCCTAATCTCCTCCAGCTCTCCAAGACTCCAGCCCTCCTACCTGTGCGCCGCGGCGCCTCTGCAACCGTTCTTCTCTGCTTCGTTCACCGGCGCCACCTCTGCACAGCGGCCAACGTTCTTCTATGCTCCGTGAGTCCGTTCATCGACACCATCTCTGCAGCCGCGCGCGTTCTTCTCGTTCTGCAGGTTGCTACTCTGCTGGCTACAAAAACTGGTTTCTCGTTCTGTTGGCTACTCGTTTTCTACTGGTCGCTGTTGCCTCTGTTGGTTGTTGTTCAGTTCAACTCTTCAAGGCATGTTTGGTTTTTTTAG 513 0.4854 VLFFLFILKQYHQYQVVGRALPTENDEHPKIYRMKLWATNEVHAKSKFWYFLRKLKKVKKSNGQKQTPNLLQLSKTPALLPVRRGASATVLLCFVHRRHLCTAANVLLCSVSPFIDTISAAARVLLVLQVATLLATKTGFSFCWLLVFYWSLLPLLVVVQFNSSRHVWFF. 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01335 170 FunFam 60S ribosomal protein L18a 8 69 - -
Seca12g01335 170 Hamap 50S ribosomal protein L18Ae [rpl18a]. 11 65 IPR028877 -
Seca12g01335 170 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 12 64 IPR023573 GO:0003735|GO:0005840|GO:0006412
Seca12g01335 170 Gene3D - 6 69 - -
Seca12g01335 170 PANTHER 60S RIBOSOMAL PROTEIN L18A 11 64 IPR028877 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01335 Seca-Chr12 13142890 13144115 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01335 10 64 Cytoplasmic Ribosomal Protein Gene Family AT3G14600 89.091 3.73e-31 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01335 K02882 K22683 zju:107416111 115.161