Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01330 ATGGCATCATCAGCAAAGCGATGCCATTACGAAGTGCTGGGTCTTCCCCGAGACTGCACCCCCGACGAGATCCGATCAGCTTACCGCCGTCTCGCCCTTCAGCGCCACCCTGACAAGCTCGTCCAATCCGGTATCTCCCAATCCGAAGCCACCGCTCAGTTTCAGGAGCTGCAACAGGCCTACGAGGTCCTCTCCGACCCTAAGGAGCGTGCTTGGTACGACTCTCACCGTTCCCAGATCCTCTTCTCCGATCCCGATTCCCTTGGCAAAAACTCCGTCGTCCCCGACCTCTTCTCCTTCTTCTCCAACACTGTCTATTCCGGCTACTCCGATTCCGGCAGGGGTTTCTACAAGGTCTATTCCGATGTCTTTGACAAAATCCACGCCAACGAGATCAACTTCGCCAAGAAAATGGGGATTGGTGTTGATGCGGTTCGACAAGCCCCTGTTATGGGGAACTTGGATAGCCCCTATGAGCAGGTTACGGCGTTTTACGGTTACTGGTTAGGGTTTTCGACGGTGATGGATTTTTGTTGGGCGGATGAGTACGATGTGATGGCCGGTCCGAACCGGAAGTCACGGCGGTTGATGGAGGAAGAGAACAATAAGGTGAGGAGGAAGGCGAGGAAGGAGTATAATGAGACTGTGAGAAAGTTGGCTGATTTTGTGAAGAAGAGGGACAAGAGGGTGATTGATATGAAGGTGAAGAAGAGTATGGAGATGGAGAAGAAGAAAGAGGAGGAGAAGGAGAGGAAGAGGAGGTTGGAGAAGGAGAGAAAGCAAAGGGCTATGGCTTATGAGGAGCCTGATTGGGCTAAGGTTGAGGAGGTTGAGGAGGAGGTGGAGGATTGGATTGAGGAGTTGGAGGAGAAGAAGGATGAGAAGGAGTTTTATTGTGTGCTTTGTGGGAAGAAGTTTAAGAGTGAGAAGCAATGGAAGAACCATGAGCAGTCCAAAAAGCATAAGGAGAAAGTTGCAGAGTTCAGGGATTCACTTGGTGATGAAGAGGAAGAGGATTTAGAAGCAGAGGTGGAAGAAGAAAAAGAAGAAGGAACAAGAAAGGAGGGATTGGAAAGTGAGGAAGATGGAATTGAGGGGAGTAGTGATCATTTAGGGGAGGCTGATTATGGGGTTGGTGATTTGGATGGGAGGTTTAGAGATGGTCTCAATGTTGCAGAAGGGGAGGATAGAAATGGGGATGAAGTGAATGATGATGGTGATGATTTTTTTTGTGCACCACATGCAGATGGTGAGGAAGTGGATGTGTCAGTTGATTTTGATGATGTTGATGAGGATGATGATGAAAATGGTTTTCTTGAAGCAATGGTAGCTGGGCACAAGAACAGAAAACCTAGTGCTTCAACACATAAGCCCAAGGCTTCAGTAACTCCAACTCAAATTGAGCATGAGAACGATGAGGTTAACCCAATGGAATATAACAACCGAAAGAGCTCAAGAAAGAAACGAGGAGCCAAGAAAGAGAAAGGTAGGAGGAATTGGGAAGAATCTAATGAGGCTGCTGTCAATGGCAATTGTGAGAATATGAACAGCAATAGAAATGATAATTCTTTTGGAGAAGAGTCTACTTCCCAACATTTTGTGGAAAATGAGGGTAATGGTAAAGAGAATGAGCAGGTGGACAGAGATAACAAGAGTTCAAATCAACCAGCTGATAAAAAAGGAAATTCAAAGGACACAAAAACCAAAGCAAAAATTTCATCCAAAGGAAGAAAAGGAAAGTGGTTTCTATGTAGCTGTAGCCAGGATAGTGTTGATTATGTGTTCTGGTCATGTCTTACAATTGAGCTGGTCTTTGTGTTGTATAATGTATATCCTTTTTTTTTTTTTTATTTCTTAAAAAGGTGGCATCAAATAATCTTGGCAATACTTGCGGGACATGTGGAGAGGAGTTTGAGTCAAGGAATAAATTACATAAGCATCTGGGCGATTCTGGGCATGCGAAAATAA 1968 0.4548 MASSAKRCHYEVLGLPRDCTPDEIRSAYRRLALQRHPDKLVQSGISQSEATAQFQELQQAYEVLSDPKERAWYDSHRSQILFSDPDSLGKNSVVPDLFSFFSNTVYSGYSDSGRGFYKVYSDVFDKIHANEINFAKKMGIGVDAVRQAPVMGNLDSPYEQVTAFYGYWLGFSTVMDFCWADEYDVMAGPNRKSRRLMEEENNKVRRKARKEYNETVRKLADFVKKRDKRVIDMKVKKSMEMEKKKEEEKERKRRLEKERKQRAMAYEEPDWAKVEEVEEEVEDWIEELEEKKDEKEFYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFRDSLGDEEEEDLEAEVEEEKEEGTRKEGLESEEDGIEGSSDHLGEADYGVGDLDGRFRDGLNVAEGEDRNGDEVNDDGDDFFCAPHADGEEVDVSVDFDDVDEDDDENGFLEAMVAGHKNRKPSASTHKPKASVTPTQIEHENDEVNPMEYNNRKSSRKKRGAKKEKGRRNWEESNEAAVNGNCENMNSNRNDNSFGEESTSQHFVENEGNGKENEQVDRDNKSSNQPADKKGNSKDTKTKAKISSKGRKGKWFLCSCSQDSVDYVFWSCLTIELVFVLYNVYPFFFFYFLKRWHQIILAILAGHVERSLSQGINYISIWAILGMRK. 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01330 655 Coils Coil 274 294 - -
Seca12g01330 655 MobiDBLite consensus disorder prediction 239 261 - -
Seca12g01330 655 Coils Coil 194 214 - -
Seca12g01330 655 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 1 583 IPR044648 -
Seca12g01330 655 Coils Coil 238 265 - -
Seca12g01330 655 PRINTS DnaJ domain signature 49 69 IPR001623 -
Seca12g01330 655 PRINTS DnaJ domain signature 28 43 IPR001623 -
Seca12g01330 655 PRINTS DnaJ domain signature 10 28 IPR001623 -
Seca12g01330 655 MobiDBLite consensus disorder prediction 428 572 - -
Seca12g01330 655 ProSitePatterns Nt-dnaJ domain signature. 54 73 IPR018253 -
Seca12g01330 655 MobiDBLite consensus disorder prediction 309 414 - -
Seca12g01330 655 SUPERFAMILY Chaperone J-domain 4 80 IPR036869 -
Seca12g01330 655 Pfam Zinc-finger double-stranded RNA-binding 297 322 IPR022755 -
Seca12g01330 655 ProSitePatterns Zinc finger C2H2 type domain signature. 299 321 IPR013087 -
Seca12g01330 655 ProSiteProfiles Zinc finger C2H2 type domain profile. 297 326 IPR013087 -
Seca12g01330 655 Gene3D Classic Zinc Finger 286 349 - -
Seca12g01330 655 SMART ZnF_U1_5 294 328 IPR003604 GO:0003676|GO:0008270
Seca12g01330 655 Coils Coil 318 338 - -
Seca12g01330 655 ProSiteProfiles dnaJ domain profile. 8 77 IPR001623 -
Seca12g01330 655 SMART dnaj_3 7 69 IPR001623 -
Seca12g01330 655 MobiDBLite consensus disorder prediction 332 346 - -
Seca12g01330 655 MobiDBLite consensus disorder prediction 309 331 - -
Seca12g01330 655 SUPERFAMILY beta-beta-alpha zinc fingers 289 339 IPR036236 -
Seca12g01330 655 MobiDBLite consensus disorder prediction 537 572 - -
Seca12g01330 655 CDD DnaJ 8 66 IPR001623 -
Seca12g01330 655 MobiDBLite consensus disorder prediction 347 397 - -
Seca12g01330 655 Gene3D DnaJ domain 1 87 IPR036869 -
Seca12g01330 655 MobiDBLite consensus disorder prediction 455 470 - -
Seca12g01330 655 MobiDBLite consensus disorder prediction 504 536 - -
Seca12g01330 655 Pfam DnaJ domain 9 74 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01330 Seca-Chr12 13054492 13057042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01330 1 334 C2H2 Transcription Factor Family AT1G74250 69.075 3.06e-155 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca12g01330 DnaJ 4.1e-22 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01330 K09506 - gmx:100788305 763.451