Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01326 ATGGCTTTCTTTGGTAGACTTGGGAATATACTAAGACATGCAGCAAACAGGCAAATTGGTTCAGAATTGCGTTCATCTCCATCTGTTTTCCAGGCTATACGATGCATGTCATCTGCTCCAAACTCAAAGCTGTTTATAGGAGGTGTTTCATATTCTACTGATGAGCAAAGTTTGAGGGAAGCTTTTTCAAAATATGGTGAAGTTGTTGATGCAAGGATTATTATGGATCGTGAAACTGGTAGATCCAGAGGATTTGGCTTTGTTACTTACAGTTCAGTTGAGGAGGCATCAAGTGCCATTCAGGCCTTGGATGGTCAGGACCTTCAAGGTCGCCAGATTAGGGTAAATTATGCTAATGAAAGGCCTCGTGGATATGGTGGCGGTGGCGGTTTTGGTGGTTCTTATGGCAACGCACCATATGGTGCTGGAGCTGGAGCTGGCTATGGAGGTGCTTATGGTAGCTCTCCATATGGAGGTGCTTCAAGTGGTGGTGGCTATGGTGGAAATGTTGGTGGTGGTTATGGTGGTGGTGGATATGGTGGAGGCAGCTATGGATCAGGTGGCAGTTATGGGGGCAGTGGCTCTGGTGATAACTATTCTGCTCCTGACAGTTTTGGGACTGGTGTAAACAGTGGAGGCTATGGTGGTAACACTGGGAGTTTTGGTGATGCTGGTGGTGTAAGCAATCATGAAAGCTCTGCTGGTTTCCCTGGCAGTGATAGTTATGCCAGTGCTGGTGATGGTGGTGACAGCCATGGTTTTGCCAGTAGTGGATATGATGGAAGTGCTGTTGATGGCAGTGGTCAATTGGATGGCAAAGACAGCATCAATGTAAATGAGGAAGCAGGTGGTTTTGGGCACTCTTTGGATGGAAATTACAGGGATGACGATGATGATGCTGGTAATTTTGCCAAAAGGGCTTGA 924 0.4665 MAFFGRLGNILRHAANRQIGSELRSSPSVFQAIRCMSSAPNSKLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFVTYSSVEEASSAIQALDGQDLQGRQIRVNYANERPRGYGGGGGFGGSYGNAPYGAGAGAGYGGAYGSSPYGGASSGGGYGGNVGGGYGGGGYGGGSYGSGGSYGGSGSGDNYSAPDSFGTGVNSGGYGGNTGSFGDAGGVSNHESSAGFPGSDSYASAGDGGDSHGFASSGYDGSAVDGSGQLDGKDSINVNEEAGGFGHSLDGNYRDDDDDAGNFAKRA. 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01326 307 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 21 205 - -
Seca12g01326 307 SUPERFAMILY RNA-binding domain, RBD 38 150 IPR035979 GO:0003676
Seca12g01326 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Seca12g01326 307 PRINTS Eggshell protein signature 38 54 - -
Seca12g01326 307 PRINTS Eggshell protein signature 184 194 - -
Seca12g01326 307 PRINTS Eggshell protein signature 208 226 - -
Seca12g01326 307 PRINTS Eggshell protein signature 156 171 - -
Seca12g01326 307 FunFam Glycine-rich RNA-binding protein 3 mitochondrial 21 144 - -
Seca12g01326 307 SMART rrm1_1 43 116 IPR000504 GO:0003723
Seca12g01326 307 MobiDBLite consensus disorder prediction 223 239 - -
Seca12g01326 307 Gene3D - 16 137 IPR012677 -
Seca12g01326 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Seca12g01326 307 MobiDBLite consensus disorder prediction 290 307 - -
Seca12g01326 307 CDD RRM2_NsCP33_like 43 118 - -
Seca12g01326 307 MobiDBLite consensus disorder prediction 223 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01326 Seca-Chr12 13024100 13027386 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01326 38 159 Eukaryotic Initiation Factors Gene Family AT3G16380 35.878 6.13e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01326 K12741 - gmx:100799124 216.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01326 12 13024100 13027386 Seca12g01326 12 13024100 13027386 ECH