Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01316 ATGGGAGGAAAAGACAGGCACAGCAAGGTCTGCACCATTAGTGGACTGAAGGACCGTCGCATTAGGTTGTCTGTACCCACAGCACTTGAGTTATATGATCTTCAAGACAAACTTGGACTCAGTCAATCAAGCAAGGTGGTAGATTGGTTACTTGAAGTCACCAAATATGAGATTGATAGCTTCCACCACTTCAAATCCCTCAATGTTTTACTCAGTTTCATCATCAAACCCTACTGCCTCATCATCATGAAGCAGGTACCTTTAAGCTTTCTCTTGCAGGGTTACGTGATGTTAGTTCCATATCTACAAAGGATGCAGGAAATCAAAACCTCATGGCAATGTCAAGGTATTGGGATATAG 360 0.425 MGGKDRHSKVCTISGLKDRRIRLSVPTALELYDLQDKLGLSQSSKVVDWLLEVTKYEIDSFHHFKSLNVLLSFIIKPYCLIIMKQVPLSFLLQGYVMLVPYLQRMQEIKTSWQCQGIGI. 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01316 119 Pfam TCP family transcription factor 3 62 IPR017887 -
Seca12g01316 119 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 59 IPR005333 GO:0003700
Seca12g01316 119 ProSiteProfiles TCP domain profile. 3 61 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01316 Seca-Chr12 12899074 12899433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01316 2 61 TCP Transcription Factor Family AT5G60970 75.000 8.63e-29 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca12g01316 TCP 8.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01316 - - gmx:100804574 106.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01316 12 12899074 12899433 Seca4g03374 4 58450283 58452566 PCT