Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01313 ATGGCAGCCAAGCTGTTGCATTCTTTAGCAGATGATAACCCAGATTTACAGAAGCAAATAGGATGTATGACTGGGATTTTCCAACTCTTTGATCGTCACCATATTATCACTGCTCGCCGCATTAGCCAGAAAAGGCTTCCTCCTGGTAATTCCCACTTCAATTATGACAGCCTGCAAAGAGATTATTCTAATAGCATACACCAACGACGAACAGCAGCTGATATGAACTTAAACAAGGGTGTGAGTGAAAAACAAAGAATTTCAACAGAATCATCTAGAGCCTCATTCTCTTCTTCTTGTTCATCATCAATGTCCTCTCTGGAGTGTAAAGCTCAAGCAGATGCTCCTGACAGGATCATTTTTCCTGAAATTCCTATGAGAGACCCAGTTATGAACCTAAAAAGTACCTCTCCCCATTTAGGAAGTCACTCCCTTGACCTGAGGGATGTTGTGAAGGACTCCATGTATAGAGAGGCCAGAGGACTATCCAAAGAGAAAGCTTCCATTCGTGCTATGAAGCACAAGGATTCCCCAAGACCTCTTCATCTATCCAAATCTCTCAATGGAAAACAAAGTGTGCCTGTTGATCTAAAGGAGTCTATTCAAGTCCTTACTAAACTTAGAGAAGCACCTTGGCATTATGGTGAAGCAAAAGAACTTCCAAGATTATCATATGAAGTAAAAGATGGACAATGGCATTCAATCTCAAAGGATGCTCCTCGGTATTCTTATGATGGAAGAGGAACAAGAAGTTTGTCTTTTGAATCACCTGACACCACCAAATGTGCACCAAAGCTAAAAGAGCTTCCTAGACTTTCACTTGACAGTAGAGAAAGCTCATGGCGCACATACAGCTATGATTCAAAAGCTAGTCACCTCTCAAGAAATTTCAGTACTGGTGGAGCCTCAACCTCAGATGACAAAATCTCTAGTCTACAACAATTTTCAGCAAGCCAGAGCCGGCCACCTAGTGTTGTAGCAAAATTAATGGGCTTGGAAGCATTGCCAGAATCCTATTTGGTCAGTGATACTCAGTCAGGTTTGAGTGAAACTGGCTCAATTCAAGGTAATGGTCAGTTTTCAAAAGATGGATTCACAAGGCCACTTAGAGTTTCTAATTCCCTAAAAGGCTCATTGAAAGTTACCACTTCCCCAAGGAGGAAGAATCCTGATTTGGTTGTGAAACCTGTCTCAAGTTCAAGGTTTCCTATTGAACCAGCACCATGGAAGCAGAAGGATGGAATTCAAAGCTCTAAGAAACAAAGTTCCAGGGCCATAAAGGCTCCAGCTAGAACACTGGATTCATTTCCTTCAGTTTATAGTGAGATTGAGATGAGATTGAAGGATCTTGAATTTAAACAATCTGGAAGGGATCTCAGAGCACTAAAACGGATATTGGAAGCAATGCAAGTAAAGGGGCTGTTAGAGACCAAGAAAGAGGAACAAGCTTCCAATGATGTTGGAAATCAAAGATTCTATGAATCAAAATTGAGTCTAATTCAGGATTCTATGTCAGTGAGGCAACAAACAATCAGAGGGTCTGACTCAGCAAGGACTTTTGAATCTCCAATTGTGATAATGAAACCAGCAAAACTTGTAGACAAAACTGGATTTTCTGCTACTTCAGTCATTCCAATTGGTGGACTTTCTGATTCCAATAAACTCCACAGTGGTGGTGTACATGCACATATGAAAAAAGGGACAGCTTCTGGTCAAATAGCAAAAGATCAGTCTCCTAGAAACAGTCGCAGGGATGCTTCTACCAGTTCTAGTGATAAGAAAGCAAGTAGTAGTAAGACTATAAAATCAGCACAATCTCAACCAAGGTCTCAACAATTTGCAAAAGAAAATAGCTCAAGTTCAGTGAAGATTTCAGGATCTGTGAGCCCAAGAATGCAACAGAAGAAATTAGAGTTGGAGAGGAGATCTCGCCCACCTACCCCACCATCAGATTCAAATAAAGGCAGAAAGCAATCCAGTAAACATACAACAGAATCAGATTCTCCTGGGAGGAAACTGAGACGTAGAGTCCCTCATTCACAGCATAGTGATGACCAACTTAGTGAGATAAGCAATGAGTCAAGAAGTGTAAGTTGCCAAGAGGATGAAATATCTATGCAATCAGATAGTATAACTGTGGACTCAAAGATGGATATGGAAGTCACCAGCAGTTTACAATCTGCTGAAATTATTGATGGCCAAAGCCCATCTATGGAGGATATTGAGCAGTTGGTTTCAGGATCAATGAAGAAGAATTCAACTCTGAGGATGGATGAGGATGATTCATCTGCAGAACTTGCAATAGATGCCCCAGATCATCCAAGCCCTGTTTCAGTTCTTGATGTCTCAGAATACAAAGATCACGTGCCATCCCCTGTGAAGCTTATATCCAATGCTCACAAAGCTGGTGATGCTCAAGAATCTAAAGAGGAAGAGAATACAGATCATTGGAACCCTGCAGATAGCCTTTCAGTTAACTGCACAGGATCTGGAGAGATCAACCGCAAGAAATTGCAAAGCATAGATCACCTTGTTCAGAAGCTTAGACGGCTAAACTCAAGTCATGATGAAGCTAGAATTGATTACATAGCTTCCCTATGTGAAAACACAAATCCAGACCACAGATACATCTCGGAAATACTATTAGCTTCAGGTCTACTACTCAGAGATCTGAGTTCAGAATTTCTGACATTTCAACATCACTCATCAGGCCATCCCATTAACCCTGAGTTATTCCTTGTGTTGGAGCAGACCAAGGGAAGTAGTTTTCTTTCAAAAGAAGAAATCATCCTTGAAAAAGCTTCTTACATGAAGCTAAATTCAGAGAAGTTTCACAGGAAACTCATCTTTGATACTGTGAATGAAATTCTTGCTGCAAAATTAGGCTCTTCTCCAGAGTCATGGTTGAGGCCTAAATCTAATGGACTCACAAAGAAAATCCTCAATGCACAAAAGCTTCTTAAAGAACTGTGCTTTGAGATAGAAAAAATTCAATCCAAAAAGCCAGAGTGCAGTTTAGAAGATGAAGGGGATGAACTGAAAAGTGTGCTATGGGAAGATGTTATGCATCGCTCAGAAAGCTGGACAGATTTCAACTGTGAAATACCTGGGGTTGTGTTGGATGTTGAGAGACTAATATTTAAGGACTTAGTTAATGAAATTGTGATTGGTGAAGCAGAAGCAGCTAGTTTGAGATTCAAGTCAGTTAGACGCAGGAAGCTGTTTGGAAAGTAG 3234 0.4069 MAAKLLHSLADDNPDLQKQIGCMTGIFQLFDRHHIITARRISQKRLPPGNSHFNYDSLQRDYSNSIHQRRTAADMNLNKGVSEKQRISTESSRASFSSSCSSSMSSLECKAQADAPDRIIFPEIPMRDPVMNLKSTSPHLGSHSLDLRDVVKDSMYREARGLSKEKASIRAMKHKDSPRPLHLSKSLNGKQSVPVDLKESIQVLTKLREAPWHYGEAKELPRLSYEVKDGQWHSISKDAPRYSYDGRGTRSLSFESPDTTKCAPKLKELPRLSLDSRESSWRTYSYDSKASHLSRNFSTGGASTSDDKISSLQQFSASQSRPPSVVAKLMGLEALPESYLVSDTQSGLSETGSIQGNGQFSKDGFTRPLRVSNSLKGSLKVTTSPRRKNPDLVVKPVSSSRFPIEPAPWKQKDGIQSSKKQSSRAIKAPARTLDSFPSVYSEIEMRLKDLEFKQSGRDLRALKRILEAMQVKGLLETKKEEQASNDVGNQRFYESKLSLIQDSMSVRQQTIRGSDSARTFESPIVIMKPAKLVDKTGFSATSVIPIGGLSDSNKLHSGGVHAHMKKGTASGQIAKDQSPRNSRRDASTSSSDKKASSSKTIKSAQSQPRSQQFAKENSSSSVKISGSVSPRMQQKKLELERRSRPPTPPSDSNKGRKQSSKHTTESDSPGRKLRRRVPHSQHSDDQLSEISNESRSVSCQEDEISMQSDSITVDSKMDMEVTSSLQSAEIIDGQSPSMEDIEQLVSGSMKKNSTLRMDEDDSSAELAIDAPDHPSPVSVLDVSEYKDHVPSPVKLISNAHKAGDAQESKEEENTDHWNPADSLSVNCTGSGEINRKKLQSIDHLVQKLRRLNSSHDEARIDYIASLCENTNPDHRYISEILLASGLLLRDLSSEFLTFQHHSSGHPINPELFLVLEQTKGSSFLSKEEIILEKASYMKLNSEKFHRKLIFDTVNEILAAKLGSSPESWLRPKSNGLTKKILNAQKLLKELCFEIEKIQSKKPECSLEDEGDELKSVLWEDVMHRSESWTDFNCEIPGVVLDVERLIFKDLVNEIVIGEAEAASLRFKSVRRRKLFGK. 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01313 1077 Pfam Domain of unknown function (DUF4378) 873 1053 IPR025486 -
Seca12g01313 1077 PANTHER LONGIFOLIA PROTEIN 1 1075 IPR033334 GO:0051513
Seca12g01313 1077 MobiDBLite consensus disorder prediction 346 428 - -
Seca12g01313 1077 MobiDBLite consensus disorder prediction 690 709 - -
Seca12g01313 1077 MobiDBLite consensus disorder prediction 799 823 - -
Seca12g01313 1077 MobiDBLite consensus disorder prediction 591 632 - -
Seca12g01313 1077 MobiDBLite consensus disorder prediction 555 709 - -
Seca12g01313 1077 MobiDBLite consensus disorder prediction 161 187 - -
Seca12g01313 1077 Pfam DUF761-associated sequence motif 317 339 IPR032795 -
Seca12g01313 1077 MobiDBLite consensus disorder prediction 655 689 - -
Seca12g01313 1077 MobiDBLite consensus disorder prediction 346 385 - -
Seca12g01313 1077 MobiDBLite consensus disorder prediction 803 817 - -
Seca12g01313 1077 MobiDBLite consensus disorder prediction 161 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01313 Seca-Chr12 12858678 12863737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01313 139 1076 TRM (TON1 Recruiting Motif) Superfamily AT1G74160 48.813 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01313 - - gmx:100787391 1372.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01313 12 12858678 12863737 Seca12g01313 12 12858678 12863737 ECH
Seca12g01313 12 12858678 12863737 Seca4g03379 4 58692255 58698416 PCT