Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01308 ATGAACGGCTTAAGAAGCGAAAGAGCCCCTCTCTTGGAGGCTGAGCGCGGTGGAAGGGGAAAGCGAAATGATGCCTCGGAAGGACCAGTCTCAGACCTTGAACATGGTGATGCGGTGCCGGCGGCAAATGTAGGATTTGGTCGAGTGCTTTCACTTGCAAAGCCTGAGGCTGGAAAGTTGGTGATTGGTACTGTGGCTCTGTTGATTGCAGCCACATCTAGTATCTTAGTTCAAAAATTTGGTGGGAAGATAATTGACATTGTCTCAGGGGATATCCGAACTCCCGAGGAGAAAGATGCAGCATTAGATGCTGTCAAGAACACCATACTAGAAATCTTTCTAATTGTTGTTTTTGGTTCAGTTTGCACAGCACTTCGAGCTTGGCTTTTTTATACTGCTAGTGAAAGAGTTGTTGCACGGCTGAGGAAGGATTTGTTCAGTCACCTTGTAAACCAGGAGATAGCCTTCTTTGATGTTACTCGAACTGGGGAACTTTTAAGTAGGCTATCTGAAGATACACAGATCATAAAGAATGCTGCAACTACCAATCTTTCTGAGGCCATGAGAAACCTTTCAACTGCATTTATTGGTCTCAGCTTCATGTTTGCAACATCATGGAAGTTAACATTGTTGGCTTTGGCTGTTGTACCTGTTATTTCTGTTGCTGTTCGTAAATTTGGCCGTTTCCTGCGTGAACTTTCTCATAAAACTCAAGCTGCAGCTGCAGTAGCATCGTCAATTGCTGAGGAATCCTTTGGTGCAATAAGAACAGTAAGATCTTTCGCCCAGGAAGATTATGAAATAACACGCTACTCTGAGAAAGTTAATGAGACACTTAAGCTTGGACTTAAACAAGCTAAAGTTGTTGGACTCTTTTCTGGAGGCCTTAATGCAGCATCTACACTTTCAGTTATTATAGTTGTTATATATGGAGCTAATTTAACAATCAAGGGTGCTATGTCCTCGGGTGATCTTACATCTTTCATTCTTTATAGTCTCTCGGTTGGATCTTCTATATCTGGTCTCTCAGGATTGTATACAGTAGTTATGAAAGCTGCAGGTGCTAGCAGAAGGGTGTTTCAAATTATGGATCGTACCTCATCCATGCCTAAGTCGGGAAATAAATGTCCTCTGGGGTCAGTTTCCTACATTTCCTAA 1158 0.4266 MNGLRSERAPLLEAERGGRGKRNDASEGPVSDLEHGDAVPAANVGFGRVLSLAKPEAGKLVIGTVALLIAATSSILVQKFGGKIIDIVSGDIRTPEEKDAALDAVKNTILEIFLIVVFGSVCTALRAWLFYTASERVVARLRKDLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEAMRNLSTAFIGLSFMFATSWKLTLLALAVVPVISVAVRKFGRFLRELSHKTQAAAAVASSIAEESFGAIRTVRSFAQEDYEITRYSEKVNETLKLGLKQAKVVGLFSGGLNAASTLSVIIVVIYGANLTIKGAMSSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQIMDRTSSMPKSGNKCPLGSVSYIS. 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01308 385 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 42 373 IPR039421 -
Seca12g01308 385 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 61 351 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca12g01308 385 MobiDBLite consensus disorder prediction 1 36 - -
Seca12g01308 385 FunFam ABC transporter B family member 25 112 381 - -
Seca12g01308 385 CDD ABC_6TM_AtABCB27_like 63 359 - -
Seca12g01308 385 Gene3D ABC transporter type 1, transmembrane domain 44 374 IPR036640 GO:0005524|GO:0016020
Seca12g01308 385 MobiDBLite consensus disorder prediction 9 31 - -
Seca12g01308 385 SUPERFAMILY ABC transporter transmembrane region 48 364 IPR036640 GO:0005524|GO:0016020
Seca12g01308 385 Pfam ABC transporter transmembrane region 60 333 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01308 Seca-Chr12 12802636 12806091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01308 46 378 Calmodulin-binding Proteins AT2G36910 21.930 9.10e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01308 - - gmx:100810510 656.751