Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01306 ATGGCTGCTCCTTATGCGTTTTCTGTAAGAGGGGACTCCAATTCCAAGCTTTCAAACTCTGTGGTGGACTCTAACGGTAGGGATTCCCTTATTGATTTGAAGCTAGGACGATTTGCTGATCATGGAGATGCCATTGGTCCAACATTTTCCAAAGGAGCACCAATTTTGTCTTCTTCTGAGTCAGCAATACCTCCTAAGAGAGTTAGAGCTTCAGGGGTGCACTCACAGACTGCATACTGCCAAGTCTATGGCTGTAACGAGGATCTCAGCACCTGTAAAGACTACCACAAGAGGCACAAAGTTTGTGAGGTTCACTCCAAGACTCCCACAGTTATAGTGAATGGTATTGAGCAGAGGTTTTGTCAGCAATGCAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGCAGCTGCCGTAGACGCCTTGCAGGCCATAATGAGGGTGGTCATCTGATATTAGTAAAATTGTTTCATTTGAAGTTTGATAAAGATCCTATGGTTATTGCAGATAGCAGATTCCAGGGAGCCAAGCTAACACCAGCATCTTTTATCCGCCCGGAGATGCTCCCTAGTGGGGTCATGCATTCTGACAGATATGGAATAAGTGGCTTCTGGAGACCTATAAAAGCAGAATATGGGGCTGGCTTTAGGCATCTCTCTTCTATGCCTATTACCAATGGACATCCTCTGTCAAGATCTCCATTTCCTTCATACAGCCAAAAACAATTTCCCTTTCTTCATGAAAATGGTGCCACATCCACTACAGGAACTGGAAGCATCTTCTGTGAAAACAACAGCCAATATCCACCTGCCCTTGGGGCTCATAATTCTGGGTTACGACCACTATTCCATGACACCTTAGGAACTGAGGACTTCAATGTTTTTGATACAGCATCGACTGTTCAAGGATTGTCGGGAATTTCAGACTCATGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCAATCAACAGGAATTCCCTTGGCTCACACCTTGGTTATCCCAAGCAGCCATAGTCATCACTATAGCATGAGTCAGGTCTCTGAAAAGATAGGAATAAACTCGCAGTCTTCTTCAAGCCGAGTGTCAGATAGGTTTCCATCAGAACTAAATTCTGCAGATGGAGGTCATCTTGGTCCTGTACTTATATCAGACAATAATGACATAGTCAACTTTGAAATGGAAGACGGGATTTTCCATGATTCAGATTTTGTGAATGTGAAAGATCGTCTTCACTGTGAAGATGGTGCAACCATAGACTTGCTCCAACTGTCATCACAGCTCCAGCGAGTTGAGCATCAGAGGCAATCCTTGCAGGTGAAGCAAGAAAATGATTCTTCTTGCACACTCCGGATTACTTAA 1383 0.4411 MAAPYAFSVRGDSNSKLSNSVVDSNGRDSLIDLKLGRFADHGDAIGPTFSKGAPILSSSESAIPPKRVRASGVHSQTAYCQVYGCNEDLSTCKDYHKRHKVCEVHSKTPTVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNEGGHLILVKLFHLKFDKDPMVIADSRFQGAKLTPASFIRPEMLPSGVMHSDRYGISGFWRPIKAEYGAGFRHLSSMPITNGHPLSRSPFPSYSQKQFPFLHENGATSTTGTGSIFCENNSQYPPALGAHNSGLRPLFHDTLGTEDFNVFDTASTVQGLSGISDSCCALSLLSSQSQNSSSQSTGIPLAHTLVIPSSHSHHYSMSQVSEKIGINSQSSSSRVSDRFPSELNSADGGHLGPVLISDNNDIVNFEMEDGIFHDSDFVNVKDRLHCEDGATIDLLQLSSQLQRVEHQRQSLQVKQENDSSCTLRIT. 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01306 460 SUPERFAMILY SBT domain 78 150 IPR036893 GO:0003677|GO:0005634
Seca12g01306 460 FunFam Squamosa promoter-binding-like protein 14 71 141 - -
Seca12g01306 460 Gene3D - 70 141 IPR036893 GO:0003677|GO:0005634
Seca12g01306 460 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 39 446 IPR044817 GO:0003677
Seca12g01306 460 Pfam SBP domain 80 149 IPR004333 GO:0003677
Seca12g01306 460 ProSiteProfiles Zinc finger SBP-type profile. 77 154 IPR004333 GO:0003677
Seca12g01306 460 Coils Coil 428 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01306 Seca-Chr12 12776024 12778977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01306 31 197 SBP-box Gene Family AT1G69170 50.595 4.71e-46 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca12g01306 SBP 2.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01306 - - gmx:100817547 647.506