Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01305 ATGTATAACAGCACATTTAAGAAGAAAGCCCCAAAAGCAATTAAGGAGATAAGGAAATTTGCCCAGAAAGCAATGGGAACCAATGATGTGAGGGTGGATGTGAAGCTCAACAAGTATGTTTGGAGCCAGGGAATCCGAAGTGTTCCAAGGAGGATTAGGGTACGCATTGCTCGCAAGAGGAATGATGATGAAGATGCCAAGGAAGAGCTATACTCCCTTGTTACATTTGTTGAAATCCCTAAGGAAGAGCTCAAGGGGTTGGGCACTAAGGTCATTGATGATGAGGATTGA 291 0.4364 MYNSTFKKKAPKAIKEIRKFAQKAMGTNDVRVDVKLNKYVWSQGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTFVEIPKEELKGLGTKVIDDED. 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01305 96 Pfam Ribosomal protein L31e 3 68 IPR000054 GO:0003735|GO:0005840|GO:0006412
Seca12g01305 96 SMART Ribosomal_L31e_2 1 69 IPR000054 GO:0003735|GO:0005840|GO:0006412
Seca12g01305 96 PANTHER 60S RIBOSOMAL PROTEIN L31 3 95 IPR000054 GO:0003735|GO:0005840|GO:0006412
Seca12g01305 96 FunFam Os08g0505300 protein 25 96 - -
Seca12g01305 96 ProSitePatterns Ribosomal protein L31e signature. 30 44 IPR020052 GO:0003735|GO:0005840|GO:0006412
Seca12g01305 96 SUPERFAMILY Ribosomal protein L31e 3 68 IPR023621 -
Seca12g01305 96 CDD Ribosomal_L31e 1 68 IPR000054 GO:0003735|GO:0005840|GO:0006412
Seca12g01305 96 Gene3D - 1 96 IPR023621 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01305 Seca-Chr12 12770926 12771216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01305 1 96 Cytoplasmic Ribosomal Protein Gene Family AT4G26230 76.042 9.21e-51 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01305 K02910 - gmx:100305583 165.236